Detail information of Os04g0349401_circ_g.1


General Information
CircRNA Name Os04g0349401_circ_g.1
ID in PlantcircBase osa_circ_023480
Alias Os04circ03003/Os_ciR2293
Organism Oryza sativa
Position chr4: 16639497-16641971  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os04g0349401
Parent gene annotation Hypothetical conserved gene. (Os04t0349401-00)
Parent gene strand -
Alternative splicing Os04g0349401_circ_g.2 Os04g0349401_circ_g.3 Os04g0349401_circ_g.4 Os04g0349401_circ_g.5
Support reads 2/5
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0349401-00:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATATAGCTTATTACATCATGTCCATTGGACCATCAAATAATAGATTGTTAGATGTCGAATTTA
ATATGCAGCTTTTTCCGACAGTCTGCTGGACTGAAAagaaaaggatacaggtgaaggctatacc
aagatgcttgtattagtatactgcaagataatgtcaaatagcagtgtaaaaataagaacaaaac
atcaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAAAGGATACAGGTGAAGGCTATACCAAGATGCTTGTATTAGTATACTGCAAGATAATGTCA
AATAGCAGTGTAAAAATAAGAACAAAACATCAAAAAGAACTCAAAATGTAAGATAGCAAGTATA
CCTGACCAAAAAAAGGGCAATTGTTTTCTTCAGTAATGGCGATCATGTTTTCTTCTATGATGTG
CCCCATCATGGTATATCTCACGCTGCCCCGTAGACGCCTCATCAATCATGCTTGTTGCAGGATC
AACATCAGAATATGCGCTTTGGGGATCAGATCTATCACTGAACTTATCTTGAGTCACAGACACT
GATCTATGCCGGGTATGACTAGTTGTACTTACATCATTGCTTCTGACTCTTGACATGCGGTCAT
ATTCTCTCTGAGGACCATCTTGTACAACTGCTTGATTCAGAATAATAGTCTGACCCATTTTTGT
TGTACTTATAACCATATTTCCTATGATCATCAGAATTTCTTTGGTGTCCGCTGTTCTCATGATG
GTGAGAATACCTTTGATCTACTGTGCTTTCTGAATCTTTAATACTTCTATTCTCATGATCAGAT
ACTTTCTGGTACTGGCGTTGATGACTTCCATTTCTTAAGTCCTTATATGAATCCCTCGTGCCAT
GGTTCCTTGATGAAACTATTCCAAAAGAATTAGCACATGGTAATTTTTCACAACTGACTGATGG
AATACCAAAACTGTCCTTACCATAAGAACTGCTTGTAGGATTAAAACTTCCTTGGTATGTGCCA
TCATGAGGACTATTCTTAAGCACACTCTGTGCAATATCACCAGGCACATCCAAATGGCAACCAA
TCCCTCCTGCCTGTTTGATCTCTTCCATATGCTCATCAATTATGTCTCTTAAAATCTTCAACAG
AGAAGGAAAAAAAATTAAATCCATATATCGATCACATATTGCAGAATCAACTGAGTATAAGTAA
CATAACATGCACTGAAGGGTCATCTGAGTATATGACACATTGAACAATCTAGATGGTATAAGAA
TAATTAAATATGAAATCTAAGCGTAACTAACTTGAGATTGAAAATGAATAAATAAATCAATTGA
GATGATGTTCCCTGACTTCGAACCCTAATAGAAAGTGAGCTGTCATCAACAAAAGAGAGTGTTG
AGTAATGTTCCACCTGAAAAGTTACATAGACCCTCCATGTAAATCTGAATTATCATGGTCACAA
CACAACATTTGGACTGGCTTTTTGATAGTAACACACAGATAAAAATAATAATATGCTAGGAAAT
ATTTTCAAAGACATCTGATGGATTTGTTTTTCTTGTGATCAGTCACACAATCTTTTACTTATAA
TAATACCCAAGATTTCAAACGTTTGCAAGCAGGATCCCATAGAGAACTATATTTAGGGGCCATT
GGACATACATAAATGATTCATATATCAGAAAACTTGAGGATGATAAAGACAAATGATATTTTTG
AGAAACAAATCCAAACGAACCTCTTTTGGATTTCTCTTCGCTTTCTTGCCACGGTACGACGTTC
TTCTTCGCTTGTAATCTCGCTCTTCAGCTAAAAGCTCCTCTCTAGTCTTGACTCTACCAAATTC
CTTTTCAAGATGGCAATAAAGAGAGCTAAGATACACTAAAATGATATTATGAGCACCATCTTGT
ACAGAAAACAAAGTCAAGAGGATCAACACTATGTTCTTAATTTTTTTTTTAAGAAAATGTGCAT
TTAGATAGTAAATAACAAAGCAAAGAGATCAGAGCATGTTAGTCAAATGTTCAAATATAAAGTA
TCTACAGATCATTAAGGATCATAAAAACTATAAATGCAACTGTTTCATGAGTCAATATTTTTTT
CTTAAGAGCTGTTCAATAATAGGTACATACAACTCCTGGAACAACTAGAAAATATAAAAACATT
GAGCATGAGCATGGTATCTACTATCTAGATATTAAAACCTACTACTGACAGAGTGGTTGCATGC
CTTTACCTGGCTATCTACTCGGCGTGATATAATACCATCATACTCCAGAACAGCTCTGTAGTTT
GGTCGTTTTGATCGCTCCTCGCGGCCTCGTTCCAGTGCTTTTGAATATTCCAGTAAACTACCAA
CAAATGAATATATGGGGTCATGGAAGGAAAAGCTTTGTGAAACCAAGCAGAAGTGCAAAACTAA
TCATATGCTGGGAATGCAAATTACTGTGAGGGATCAGGCTGTTAAATATTATTAATAACTATTT
TAATTATGTGCATTCATGACAGGCAGCCTACATGTAGCATAAAACCAATGTACTTGAATTCATA
TATATCAGAGCAACATATTTGAAACACAGATAACTTGTGATTACTAACCCAGATTCTTTCCCTC
GAATTTCCATATAGCTTATTACATCATGTCCATTGGACCATCAAATAATAGATTGTTAGATGTC
GAATTTAATATGCAGCTTTTTCCGACAGTCTGCTGGACTGAAA
Conservation Information
Conserved circRNAs osi_circ_014257
PMCS 0.205273067
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015