Detail information of Os04g0349401_circ_g.2


General Information
CircRNA Name Os04g0349401_circ_g.2
ID in PlantcircBase osa_circ_023481
Alias Os04circ03004/Os_ciR3901
Organism Oryza sativa
Position chr4: 16639509-16641971  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os04g0349401
Parent gene annotation Hypothetical conserved gene. (Os04t0349401-00)
Parent gene strand -
Alternative splicing Os04g0349401_circ_g.1 Os04g0349401_circ_g.3 Os04g0349401_circ_g.4 Os04g0349401_circ_g.5
Support reads 2/2
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0349401-00:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATATAGCTTATTACATCATGTCCATTGGACCATCAAATAATAGATTGTTAGATGTCGAATTTA
ATATGCAGCTTTTTCCGACAGTCTGCTGGACTGAAAaggtgaaggctataccaagatgcttgta
ttagtatactgcaagataatgtcaaatagcagtgtaaaaataagaacaaaacatcaaaaagaac
tcaaaatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 124
Transcript exons: ,16641849-16641971
CCAGATTCTTTCCCTCGAATTTCCATATAGCTTATTACATCATGTCCATTGGACCATCAAATAA
TAGATTGTTAGATGTCGAATTTAATATGCAGCTTTTTCCGACAGTCTGCTGGACTGAAA

Genomic sequence AGGTGAAGGCTATACCAAGATGCTTGTATTAGTATACTGCAAGATAATGTCAAATAGCAGTGTA
AAAATAAGAACAAAACATCAAAAAGAACTCAAAATGTAAGATAGCAAGTATACCTGACCAAAAA
AAGGGCAATTGTTTTCTTCAGTAATGGCGATCATGTTTTCTTCTATGATGTGCCCCATCATGGT
ATATCTCACGCTGCCCCGTAGACGCCTCATCAATCATGCTTGTTGCAGGATCAACATCAGAATA
TGCGCTTTGGGGATCAGATCTATCACTGAACTTATCTTGAGTCACAGACACTGATCTATGCCGG
GTATGACTAGTTGTACTTACATCATTGCTTCTGACTCTTGACATGCGGTCATATTCTCTCTGAG
GACCATCTTGTACAACTGCTTGATTCAGAATAATAGTCTGACCCATTTTTGTTGTACTTATAAC
CATATTTCCTATGATCATCAGAATTTCTTTGGTGTCCGCTGTTCTCATGATGGTGAGAATACCT
TTGATCTACTGTGCTTTCTGAATCTTTAATACTTCTATTCTCATGATCAGATACTTTCTGGTAC
TGGCGTTGATGACTTCCATTTCTTAAGTCCTTATATGAATCCCTCGTGCCATGGTTCCTTGATG
AAACTATTCCAAAAGAATTAGCACATGGTAATTTTTCACAACTGACTGATGGAATACCAAAACT
GTCCTTACCATAAGAACTGCTTGTAGGATTAAAACTTCCTTGGTATGTGCCATCATGAGGACTA
TTCTTAAGCACACTCTGTGCAATATCACCAGGCACATCCAAATGGCAACCAATCCCTCCTGCCT
GTTTGATCTCTTCCATATGCTCATCAATTATGTCTCTTAAAATCTTCAACAGAGAAGGAAAAAA
AATTAAATCCATATATCGATCACATATTGCAGAATCAACTGAGTATAAGTAACATAACATGCAC
TGAAGGGTCATCTGAGTATATGACACATTGAACAATCTAGATGGTATAAGAATAATTAAATATG
AAATCTAAGCGTAACTAACTTGAGATTGAAAATGAATAAATAAATCAATTGAGATGATGTTCCC
TGACTTCGAACCCTAATAGAAAGTGAGCTGTCATCAACAAAAGAGAGTGTTGAGTAATGTTCCA
CCTGAAAAGTTACATAGACCCTCCATGTAAATCTGAATTATCATGGTCACAACACAACATTTGG
ACTGGCTTTTTGATAGTAACACACAGATAAAAATAATAATATGCTAGGAAATATTTTCAAAGAC
ATCTGATGGATTTGTTTTTCTTGTGATCAGTCACACAATCTTTTACTTATAATAATACCCAAGA
TTTCAAACGTTTGCAAGCAGGATCCCATAGAGAACTATATTTAGGGGCCATTGGACATACATAA
ATGATTCATATATCAGAAAACTTGAGGATGATAAAGACAAATGATATTTTTGAGAAACAAATCC
AAACGAACCTCTTTTGGATTTCTCTTCGCTTTCTTGCCACGGTACGACGTTCTTCTTCGCTTGT
AATCTCGCTCTTCAGCTAAAAGCTCCTCTCTAGTCTTGACTCTACCAAATTCCTTTTCAAGATG
GCAATAAAGAGAGCTAAGATACACTAAAATGATATTATGAGCACCATCTTGTACAGAAAACAAA
GTCAAGAGGATCAACACTATGTTCTTAATTTTTTTTTTAAGAAAATGTGCATTTAGATAGTAAA
TAACAAAGCAAAGAGATCAGAGCATGTTAGTCAAATGTTCAAATATAAAGTATCTACAGATCAT
TAAGGATCATAAAAACTATAAATGCAACTGTTTCATGAGTCAATATTTTTTTCTTAAGAGCTGT
TCAATAATAGGTACATACAACTCCTGGAACAACTAGAAAATATAAAAACATTGAGCATGAGCAT
GGTATCTACTATCTAGATATTAAAACCTACTACTGACAGAGTGGTTGCATGCCTTTACCTGGCT
ATCTACTCGGCGTGATATAATACCATCATACTCCAGAACAGCTCTGTAGTTTGGTCGTTTTGAT
CGCTCCTCGCGGCCTCGTTCCAGTGCTTTTGAATATTCCAGTAAACTACCAACAAATGAATATA
TGGGGTCATGGAAGGAAAAGCTTTGTGAAACCAAGCAGAAGTGCAAAACTAATCATATGCTGGG
AATGCAAATTACTGTGAGGGATCAGGCTGTTAAATATTATTAATAACTATTTTAATTATGTGCA
TTCATGACAGGCAGCCTACATGTAGCATAAAACCAATGTACTTGAATTCATATATATCAGAGCA
ACATATTTGAAACACAGATAACTTGTGATTACTAACCCAGATTCTTTCCCTCGAATTTCCATAT
AGCTTATTACATCATGTCCATTGGACCATCAAATAATAGATTGTTAGATGTCGAATTTAATATG
CAGCTTTTTCCGACAGTCTGCTGGACTGAAA
Conservation Information
Conserved circRNAs osi_circ_014257
PMCS 0.20536372
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015