Detail information of Os04g0563700_circ_g.2


General Information
CircRNA Name Os04g0563700_circ_g.2
ID in PlantcircBase osa_circ_024871
Alias NA
Organism Oryza sativa
Position chr4: 28219332-28220332  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0563700
Parent gene annotation Cyclin. (Os04t0563700-01)
Parent gene strand -
Alternative splicing Os04g0563700_circ_g.1 Os04g0563700_circ_g.3 Os04g0563700_circ_g.4 Os04g0563700_circ_g.5 Os04g0563700_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0563700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCTCTACCTCAATGAGCCAATCAATCAGAATTGCTCTCATCTTTTCATTTATGTCTCCTTG
ACTGGACATGTAATCAGGCTGCACACAACTCATTTCagaagctgctctccggtatatctactat
gtagttcgcaggtctttgtccactgctggcaacgagtgagagcacattgtgctgtgtaaactgc
agcagcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAGCTGCTCTCCGGTATATCTACTATGTAGTTCGCAGGTCTTTGTCCACTGCTGGCAACGAG
TGAGAGCACATTGTGCTGTGTAAACTGCAGCAGCAGCAAGAAGCGAAGGTCGGTACTTGAGCAT
TTGGTATTCCACCAGGGAGAGCTCCAGAATGAAAAAGGAAAGTAGCTGTAGCTGTGATTGACAA
CATGCATTATATTGGCTGTTGGGAGCTTTGTTATTCAAGTGATGAAAAACACTGATTTTGTAAT
GTTAGGATAAATCACCTGCTTGTCAGACTGAGCTGCCTTCAGAAACCGTCTCATAAAAACGTAA
GGTGTTGGTACAGACATGTTGAACTGGAGTGTGTTTAGGATCAACTTTTCCTACTCAATGAGGA
GATTTACTTGTTTAGTACGACTGCCAACAGGCCATGGCACTCTAAAATAAAAGAGGACAATATG
CAAGCACACACAAATATGAAGAGATAATAAAAAAGGATGTAAACAGAGATATTAATTTGGATGT
CATAGAAGCATTGGTCTATTTGGATATCTAAGGATTTGTAGCATTGGTCATGAAGTCAATGTAA
GTGCATACTGTATTGAACGAAATACCATTTCCAGAATTTGTCCTTTTGTATAAGCCCGGTCAGA
AATTAGCACTAGATCCTCGACGACAGGGACTGCGACTTCCTCATATTTGCAAGCAAGGAGCATA
GCTGTCACTCCAACTAGCTGCAACTTCTTCCTTGGCACAACTTGTTTTTCCAAGAATCTGTCTA
CTATGTTAACAGTAAGAAAGAGAGTCTCATCCATCAGCTCAAACTTGTGATGGACCTGGCAAGA
CACCAAATAAGATATCAAATTCAAAGATTGAATCTACTAAAAGATAAGAATGGTTCTGGGTCTG
CATATGCTTCTCTACCTCAATGAGCCAATCAATCAGAATTGCTCTCATCTTTTCATTTATGTCT
CCTTGACTGGACATGTAATCAGGCTGCACACAACTCATTTC
Conservation Information
Conserved circRNAs osi_circ_014651
PMCS 0.18750383
Functional Information
Coding potential Y
Potential coding position 28220150-28219415(+)
28220331-28220328(-)
Potential amino acid sequence MDLNEPINQNCSHLFIYVSLTGHVIRLHTTHFRSCSPVYLLCSSQVFVHCWQRVRAHCAV*(+)
MSCVQPDYMSSQGDINEKMRAILIDWLIEVHHKFELMDETLFLTVNIVDRFLEKQVVPRKKLQL
VGVTAMLLACKYEEVAVPVVEDLVLISDRAYTKGQILEMEKLILNTLQFNMSVPTPYVFMRRFL
KAAQSDKQLQLLSFFILELSLVEYQMLKYRPSLLAAAAVYTAQCALTRCQQWTKTCELHSRYTG
EQLLK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017