Detail information of BGIOSGA014544_circ_g.1


General Information
CircRNA Name BGIOSGA014544_circ_g.1
ID in PlantcircBase osi_circ_014651
Alias Chr04:28804422_28805426(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27014530-27015534  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014544
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014544_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014544-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCTCTACCTCAATGAGCCAATCAATCAGAATTGCTCTCATCTTTTCATTTATGTCTCCTTG
ACTGGACATGTAATCAGGCTGCACACAACTCATTTCcagaagctgctctccggtatatctacta
tgtagttcgcaggtctttgtccactgctggcaacgagtgagagcacattgtgctgtgtaaactg
cagcagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAAGCTGCTCTCCGGTATATCTACTATGTAGTTCGCAGGTCTTTGTCCACTGCTGGCAACGA
GTGAGAGCACATTGTGCTGTGTAAACTGCAGCAGCAGCAAGAAGCGAAGGTCGGTACTTGAGCA
TTTGGTATTCCACCAGGGAGAGCTCCAGAATGAAAAAGGAAAGTAGCTGTAGCTGTGATTGACA
ACATGCATTATATTGGCTGTTGGGAGCTTTGTTATTCAAGTGATGAAAAACACTGATTTTGTAA
TGTTAGGATAAATCACCTGCTTGTCAGACTGAGCTGCCTTCAGAAACCGTCTCATAAAAACGTA
AGGTGTTGGTACAGACATGTTGAACTGGAGTGTGTTTAGGATCAACTTTTCCTACTCAATGAGG
AGATTTACTTGTTTAGTACGACTGCCAACAGGCCATGGCACTCTAAAATAAAAGAGGACAATAT
GCAAGCACACACAAATATGAAGAGATAATAATAAAAAAGGATGTAAACAGAGATATTAATTTGG
ATGTCATAGAAGCATTGGTCTATTTGGATATCTAAGGATTTGTAGCATTGGTCATGAAGTCAAT
GTAAGTGCATACTGTATTGAACGAAATACCATTTCCAGAATTTGTCCTTTTGTATAAGCCCGGT
CAGAAATTAGCACTAGATCCTCGACGACAGGGACTGCGACTTCCTCATATTTGCAAGCAAGGAG
CATAGCTGTCACTCCAACTAGCTGCAACTTCTTCCTTGGCACAACTTGTTTTTCCAAGAATCTG
TCTACTATGTTAACAGTAAGAAAGAGAGTCTCATCCATCAGCTCAAATTTGTGATGGACCTGGC
AAGACACCAAATAAGATATCAAATTCAAAGATTGAATCTACTAAAAGATAAGAATGGTTCTGGG
TCTGCATATGCTTCTCTACCTCAATGAGCCAATCAATCAGAATTGCTCTCATCTTTTCATTTAT
GTCTCCTTGACTGGACATGTAATCAGGCTGCACACAACTCATTTC
Conservation Information
Conserved circRNAs osa_circ_024871
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021