CircRNA Name |
AT5G25610_circ_g.4 |
ID in PlantcircBase |
ath_circ_040401 |
Alias |
At_ciR3397, Ath_circ_FC3526, Ath_circ_FC3527, Ath_circ_FC5179, AT5G25610_C1, CircRD22 |
Organism |
Arabidpsis thaliana |
Position |
chr5: 8915372-8916078 JBrowse» |
Reference genome |
TAIR10.38 |
Type |
e-circRNA
|
Identification method |
CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene |
AT5G25610 |
Parent gene annotation |
BURP domain protein RD22 |
Parent gene strand |
- |
Alternative splicing |
AT5G25610_circ_g.1 AT5G25610_circ_g.2 AT5G25610_circ_g.3 AT5G25610_circ_g.5 AT5G25610_circ_g.6 AT5G25610_circ_g.7 AT5G25610_circ_g.8 AT5G25610_circ_g.9 AT5G25610_circ_g.10 AT5G25610_circ_g.11 |
Support reads |
2/153 |
Tissues |
leaf/aerial, seed, whole_plant |
Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
CT-AC
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
AT5G25610.1:1
|