Detail information of Os01g0507900_circ_g.1


General Information
CircRNA Name Os01g0507900_circ_g.1
ID in PlantcircBase osa_circ_001877
Alias NA
Organism Oryza sativa
Position chr1: 17748023-17751674  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os01g0507900
Parent gene annotation Similar to NClpP3 (ATP-dependent Clp protease proteolytic subuni
t ClpP3). (Os01t0507900-01)
Parent gene strand +
Alternative splicing Os01g0507900_circ_g.2 Os01g0507900_circ_g.3 Os01g0507900_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0507900-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAG
ACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGgtggatgatatgagtgctgatcttatca
tcagccaactcttgctgctggatgctgaggataaaactaaggacatcaaattgtttattaactc
acctggag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 667
Transcript exons: 17748023-17748137,17750709-17750884,17751214-17751309,17
751395-17751674
GTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGCTGCTGGATGCTGAGGATAAAA
CTAAGGACATCAAATTGTTTATTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTA
TGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATG
GGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTA
TGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGA
GATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAG
CAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCA
TAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCC
ACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAA
AATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGA
AGTTCAAGGAGATCTCAACAGCTTGAG

Genomic sequence GTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGCTGCTGGATGCTGAGGATAAAA
CTAAGGACATCAAATTGTTTATTAACTCACCTGGAGGCTCCATAACAGCAGGTATGTGTTCTCA
ACCTCTTATTGTAATAACTTGTGCCTTGTGCTCTTTGTGTTGATAGAGAGAAATTGACTAACTT
CATTTTAAGTATCTTGTAACGTAAATGCCTTGCAGATTATATTTGATGAAAAGTTTTGGATCCT
TTGCTGTAACACTACAAGATTTATCTAACCTTAAATGCCAATGATTTTTAAGAACCTTTACCTT
TTTTGCTACTATTTCCTGATTTCTGTTAGTCAAACAGTAATGAAACTGTGCAAAGATCATTTTG
CCCTGACTATCCAAATTTTGCCTTCTTTTTTATCAAGAGCCTTTACCTTATTCGCTATTATTTC
CCAATTTCTGTTAGTCAAGCAGTGATGGAGCTGTGCAAAGATCATTTTGTCCTGACTATACTAT
ATACCCTCTTTTTTATTTGGCCAGCCGCACATGACATTCTGTCCTACATCTTTCTTCTTCCTCT
CCAATGGAGGGCATCAGTTCATCCTGTTATTGTGGTAGATGATGAGTTCCGAGTTTCTTTTTCT
TTTCTTTTCTTTTCCTTTTGGGGTGGGAAGAGTTCAGTTTTATCATTGATTGGCTCAGGTATAA
TGTGTCTTTGTGCCCTTAATCTAGTGGATTCTAAGGTGGCTGCAAAACAGAAAGAATAACAAGT
TTACATGTGAATGAACTGATTTATGATACCAAGCTCGCTGATTAACAGGACCAAGGTTGGCTGT
TTGGCCGAGTTGACTTTAAAAAGAAGATTTTCTTGCTAATTTTGAGGAAGAATACGCAGATACC
ATTCCCCTTACATTGGTAATCAAATGGAATTTACAATAGTAGCAAGTAGATAGAAGGGTAAGAT
TTTGATTTTTCAAAAGGCAGTGGCATATAAAGTAGTGTTGGTTTTGGCATTTTGCTGTGTCAAT
TTAAGGGTCCTTGTATATAATAAACTGGCCTCTTATCTGATTGGGTTATGCGGCATTGGTGATG
CATTCAGTTACAAATGTCTCTGGTCTACATATCTGCCTATGAGTTCTTTATATTACTTGGAGAA
AATTGCACTTTACTCATGTTGAAGATCGCTTTGTTTCGTTTTATGCCATGTTTTGCACCAGGAT
ATGTTGAAATAAATTTCACTTTGCATCACGGGGTGTTCTGAAATTCCAGCGAAACCTTGTGAAA
ACACATGAGTGAAATCTTGTGAGCTCTAAATGGTGCATGTGACATACCACTCAGTGCACATAGA
TTATGGGAATGAATCAAGAATTAGTTAACGAAATCAATTCAAGTTCAACTTCTCTGATAGAACT
TTTAAACCACAGCCATGGTTCAGAAATCGAAAAATAACTATACTCACTTTTTTCGTTGGACAGG
TCTTGTGTAATAGAAACACTAAACATGCACATGAAATGTAGAACTGATGGACTGTATTTTGATT
TTTGTTTAGTTAATTTATATTTTCTGCATAATTTTGATTTCTTATTCTTTACCTGTCCTTTTAA
TCTTTGGTGTGTCAAATATGCTGATGATAATCTGGCAATAACAAAATGATAAGTTTTATGCTAC
ATGATAATGGCATCAACTTGATAACTATCCAAGCCAATTATATGCAATACGATGTTTTGCATAT
AAGGAAATGCGTGCTCCAACATTAGGAATTTGAAAAAAGCTCCTATTTTCTCTCTAGTGAAGTC
TTATGCTGCATACTTTTTGCTGATGCATTTACCAAATTCATACATACTGAAAAGGTGCTGTACA
AGTTCATCAAATACAAGAAAATTAAACCTGAAGTTTAATAATCTGTTCTCTTTTTTCGTTTCAA
GATTTACACATGCTTTTTGTGGAGTCTCTTTTTTATACCTAGGATCTGCATTCATAATCATTCT
AAAGCGCTTTAATGTCAGCAATAGAACAACTTTAACTTTCCTGAGATTGTTCATGAGTGAACAG
TGTACAGTGCCGAGCTCAACAGTAACAGTGATAAATGGTTTCAGGTTCAGCACCTTAGATTGGA
TCTTATGCATGTTGTGCAATATCTCCATGAAAATCATGATTTTATATATTATATAACCTGTGTT
TGATAAACCTTATGCCTTTAGGAGACACTGGGGGCTGTTCACTGTTTGTGCCACATTGCTGTAC
ATGTTTAATTCTGATATGAACCCAATCTTATCAGTTCGTTATCACCAATCCATGCAAACTTGGG
AATAAATTGCAGAATATCTCAAAACATCTAGAATATTTACTGAAATATGAAAGTGAATCCATCT
TGTAACATAATTCCAATATAGTGGCTTAAATCTTTTACTGTCTTCCCAATCTGCTTCACTCAAG
TTCACCAAAACCTAGTCAGTTCAATCAGCTCTGTTTCTTTTATATTTGACCCTTTTAAGCCCCT
TACCGTTTTAGGCTCTTTGTACTTGAGTTTTTAAAGTCCAACTGCCTAAACTGAACTGGACTCA
TGTTCCTGAATGTACAATTATTCTTGATAACTTTTATGCCGATCACCAGAGAAATATTTAGTTT
TGTGTTAATGCTGCCATACTGGTATCGTATGATGCAATAAACATGCCCACATCAATATACAGGA
ATGGGAGTTTATGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGG
CGGCTTCCATGGGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAA
TGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTAAGCTTTTTTATGTTG
TTTAACTCTTTTACTAGACGAACTTGCTCGGAAATTGCCTAAGGAATCGTGGGAAACAATTGGA
AGCTTTGGCTTCAACCAAACACTCCTGAAATAAAATCATAACCTCCATTTTATATGATAATATC
ATATTAAGACTAAAATCATAACTATCAATATTGCTTTTTGAAAAGAATAATTCTCGGTTGGCTT
AATTTCTGACCATTGTGCCCTATGGCAATATATGTGCTACCATGAAATGCAATGCTACTTTCAG
AAATGGGTCATCCTTTTTTTTTCAATAGAATATGTTAATTTGTGCCATCTGGCAGGTCACAGAG
ATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAA
TCACCGGGAAGCCTGAAGAGCAGGTACTCCTTGACAACTTGTTACTGATGTATTGCTTTAGCAC
AAAAGTTTGCTGTTCTCTGATCTACTGCATGCTGTTTATTTTAGATTGATGAGGATACAAAGTT
TGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAA
GGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGT
ACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCT
TATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCT
TGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.222775397
Functional Information
Coding potential Y
Potential coding position 17751616-17751670(+)
17748131-17751664(-)
Potential amino acid sequence MVMAVQVETMGSSRRSQQLEVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYD
AMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGLQIREM
MYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDEGKPGLVAPLAGAVPP
PKSRVWYLWNASGPTRKIMKNLPSEEKLIQNGNGSASGDDGKFKEISTA*(+)
MEPPGELINNLMSLVLSSASSSKSWLMIRSALISSTSSC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017