Plant Circular RNA Database

Detail information of Os11g0707000_circ_ag.8

			
						 General Information
					
						CircRNA Name
						Os11g0707000_circ_ag.8
					
						ID in PlantcircBase
						osa_circ_043514
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 28935342-28938926  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI-long
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 Os11g0707000_circ_g.15 Os11g0707000_circ_g.16 Os11g0707000_circ_g.17 Os11g0707000_circ_g.18 Os11g0707000_circ_g.19 Os11g0707000_circ_g.20 Os11g0707000_circ_g.21 Os11g0707000_circ_g.22 Os11g0707000_circ_g.23 Os11g0707000_circ_g.24 Os11g0707000_circ_g.25 Os11g0707000_circ_g.26 Os11g0707000_circ_g.27 Os11g0707000_circ_g.28 Os11g0707000_circ_g.29 Os11g0707000_circ_ag.1 Os11g0707000_circ_ag.2 Os11g0707000_circ_ag.3 Os11g0707000_circ_g.4 Os11g0707000_circ_g.5 Os11g0707000_circ_g.6 Os11g0707000_circ_ag.7 Os11g0707000_circ_g.9 Os11g0707000_circ_g.10 Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os11g0707000_circ_ag.8
ID in PlantcircBase	osa_circ_043514
Alias	NA
Organism	Oryza sativa
Position	chr11: 28935342-28938926 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	CIRI-long
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 Os11g0707000_circ_g.15 Os11g0707000_circ_g.16 Os11g0707000_circ_g.17 Os11g0707000_circ_g.18 Os11g0707000_circ_g.19 Os11g0707000_circ_g.20 Os11g0707000_circ_g.21 Os11g0707000_circ_g.22 Os11g0707000_circ_g.23 Os11g0707000_circ_g.24 Os11g0707000_circ_g.25 Os11g0707000_circ_g.26 Os11g0707000_circ_g.27 Os11g0707000_circ_g.28 Os11g0707000_circ_g.29 Os11g0707000_circ_ag.1 Os11g0707000_circ_ag.2 Os11g0707000_circ_ag.3 Os11g0707000_circ_g.4 Os11g0707000_circ_g.5 Os11g0707000_circ_g.6 Os11g0707000_circ_ag.7 Os11g0707000_circ_g.9 Os11g0707000_circ_g.10 Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14
Support reads	NA
Tissues	leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGCAATGCAGTTGTACTTCCTACTCTCACTTGATCCCCATCTTGGCGAAGACGAGATCACACTG
GAACGACTTGCCCTGGATGTTGGGCAGCTTCATCAAttcttggagatgtggacgacgagcttgt
ccatgaaagcaggggcgatgtagaagcctcccatggtgttgtcgaagtcgtacctggaggtatg
tatgcata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 127
Transcript exons: 28935342-28935418,28938877-28938926
TTCTTGGAGATGTGGACGACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGG
TGTTGTCGAAGTCACGAGATCACACTGGAACGACTTGCCCTGGATGTTGGGCAGCTTCATCAA
						
					

						Genomic sequence
						
							TTCTTGGAGATGTGGACGACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGG
TGTTGTCGAAGTCGTACCTGGAGGTATGTATGCATATATCCAGTCAGTCAATTCGATTCAATTC
AGCATATATATGAATATGATGAATAAAATCGATTGGTGTGGTGTACAAATTAGATTTAGTACGT
ACGTTCTGAGACCCTGGCTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACC
CGTGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCTGGTCATCG
GAGATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTCCAGCTCCT
TGGCCATCACCTTGAACCTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCAC
CTGCTTCTTCAGCTTCTTCCCCAGGAAGTTGGTCGGAGTGGACGCCTGCACATCCATTAATCTC
GCAAGTAAGTATCCTCATTTAATTTGCAGCAAAAACATGTACTTATCAAGCTAGCTAGCTAGCT
GCGTATGTATGTGTACCGGAGCTCCAACGGTGGAGGAGAAGGCAGCAGCCATCTTAATTTGCTG
AAAGTCGATGATTGTAGAGGATCACTGATGATGGCCGGCCGCTGCTGCTCAAAGTGTAGAGGCC
GAGCTGCGGTAGGCCTTAAATAATACAATAGAATTGGACGTCGCCATGGAAGTTGGAGGCTGTG
AGAGGCACACACTCGTCCCTGTGGATCAGCTTCCAGATCCTCCACAGGCCACACGCTGAAGATT
GGGTTCTGCACACGTGGCGCAATCTCGGCCGGCCGATCCACAGCATAGCATGACTTGGACCTGG
ATCGGAGTCTGTGAGCGAGTTAGGAGTATATTGTATTAGTGTAGGTAGGAAGGATCTCTTGGCT
TCAGTTCCTTGACCTTTCCTCACCACAGAATTCACCCATTTCTGATCAACTCTTTCTCTCTGTT
TTTTCTTTTCTTTCCTTGCCTCACATTCGTCTCCCGGCCGGCAGCTAGCGACCAGTTGCTTCAT
CAGCTCAGCTACTACATAACCTCTTCATTTTGCATCACCACAGAAAAGCCTTTTGCTGCCTCTC
GTTGCCCGGCTTCTTGGATGAGGCATGGCATGCAAATTGTATTCTAGTTGGACTACCACAAATA
TTTTGCTCTGCTACCTGCACATATTCTGCTTTCTCGATAACCATCAGGCTAGGACTGTCATTTG
GCACCACACAAACTTCTCTTAACATACAACATAAGCATTGTACGTTTTTTCCCCTTTGATGGTT
TCCGTTACCACAAAAATACAAAAATTCTAATTTTGCACTGCTGTTGATATTGTTTTTTGGTGAA
GCATCAATCGGAGGCAGCTAAATCTGCAGCAGTGCCTTAAGATGAATTTATTTGTGGTTCATAG
CTTTCGTTCCTCCTAAGCCTCTATATTGCTTTTCGTAACTTTTGAAAATTAATTGTTTGCTCAT
GTCATGTCAGTAGTAATCTTTTATGCAAGTCATGTGAAATTTCTCCTAGCTAGCTTGTCCCTAC
TAAGACGTTTGAGATGGAGGCAAGTGATTGGTAACGACACTTGTAAGGTCGAGTCTCCAGTACA
TTGGAAAATAACAGTCATCTCACTAGGCAAGTACTAGCGCACATATTGGAATTGGATAACATTC
CCCAACTTGTGCATCATTACAGATTTACAGTGATACGCTAATTGTTATCGTGCAACATGATGAA
TAGCACAGGAACTTTGATATAGCATGCATCTGTAGTAACAAATGCAACCCGCAAGTTGAGAATA
CATCCATATATAGGGAAGTGGATTTGGATCCCTCAAGGAAATATTCCCTCGTTGATTGCATGTC
ACTCAAGTGGTTATGAAAAAAATTGAGAAGATATATTAACATGTGATATATCACTCTACAAACA
TGCAAATAAAAATTCAACTTCGACATCTCGTAACGAAAAAAACAAATTTAACTCTGAATATACA
TTAACTAGCTGTTGTTTAATTTGTATTTTTCATTACAATTTGTAGAAGTTGAACTTGAACTTGT
ATATTTGTGGAGTGTTATATCACATGTTAATAGACCTTCTCAATTTTTTTTCAAATTTTTTTAT
AATCATTTGAATGACATGCAAATAACTAGGGGATATCCCCGTATATAGTCAGCATGTGTATATA
TCAATCAGCGATATGATGGCACATCCACAGTATCCAGAGATCGTACGTATCGTTGCATATGCAT
ACAGTACTGCTAGTACACTAGTGGATAATTAATGAACTATGTGACAAACGATTGGATTATGTGC
AAAAATACTAATAATGTATTAGTATATGACAAGTGTAATTTCACCACATATCACATACTTCGAG
GTATTAAAATTTGTAGTGTAAAATTTTAGTATGTACTATACTTTAAAAATTCTCATACGATTAA
TTTAAATAATACTAGTTAATTTGGGTGCAGTAGTGACAAATTAAACGTTCCTCTTTGTTAAGGG
TACAGGCTATATAGGGTGCGAAGTACAAGGAAGCATATCGATGGTGTTCATATATATATATATA
TATATATTCATTAATCAAGTGCAAAATTAAGAAGCTGGTGGTGAATTGGTGATGGATTGAGTTC
AGTTGTAGACGCAGCTGCCGTCGTCGCTCCTGGCGGTAGGGTCGTAGTTGGCGGCGCGTTGGTC
GGTGCATCCCGCCGGCACGGGGACGGGCGACTGCTGCTCGGCCTTGCCGTAGAACTCGCCGGAG
TCGTGGTTGGCGTCTCCGAGCGCCGCCTCGCTGAGGTACTTATCGGCGAGCCGCACCCTCTTGA
CGTTCTCCTGCTCCCTCACCAGCATGTGCCGGCCCGTACTCCATCAGCTTGTCGATCGTCATCT
TGGGCTGCTCCAACTCGATCCGGCGGAGTTCACCAGCCTCCTGCCGATGTTCTCCACCCCGATC
TCCGCCACCCACCGCCGCACCTCGTCGCCGTACACCCGCGCCCGCAGCGCCCCGAAGAAGTCGA
TGGGAACGCGTCGGGGACCTTGTCGCTGCGGAAGATGCCCCTGCACACGCCAATGCGGTCCTCG
CGGGTGGGAGCCCAGTAGAACTTGTCCATGCGCCCGTCGCGGATGAGCGGGAGAAGTCGTTGCC
GGTGACGATGATGGGGACGGGGGTTGTACATCCCTGGGAGCTGCACGTTGGTGGGGTTGTCCGC
GATGTTCATCAGCGTCGCGTTCACCATCTGGTTGTTCACCGTGTACTGCGTCGTGCCGCCCCGC
GTCCAGGTCGTTGATGAACAGCACGCACATCTTCCCCTTGTTGATCATGTCCGCCGCCTCGCGG
TACCGCTGCCGGATCAGCTTCGCGGGCTCTCCGGCGCTCATCATGATGAGGCTGCATGCATGCA
GTTGTACTACTATTACAACACACGCAGCATGCAATGCAGTTGTACTTCCTACTCTCACTTGATC
CCCATCTTGGCGAAGACGAGATCACACTGGAACGACTTGCCCTGGATGTTGGGCAGCTTCATCA
A
						
					

			
		

Sequences
Splice junction sequence	TGCAATGCAGTTGTACTTCCTACTCTCACTTGATCCCCATCTTGGCGAAGACGAGATCACACTG GAACGACTTGCCCTGGATGTTGGGCAGCTTCATCAAttcttggagatgtggacgacgagcttgt ccatgaaagcaggggcgatgtagaagcctcccatggtgttgtcgaagtcgtacctggaggtatg tatgcata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 127 Transcript exons: 28935342-28935418,28938877-28938926 TTCTTGGAGATGTGGACGACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGG TGTTGTCGAAGTCACGAGATCACACTGGAACGACTTGCCCTGGATGTTGGGCAGCTTCATCAA
Genomic sequence	TTCTTGGAGATGTGGACGACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGG TGTTGTCGAAGTCGTACCTGGAGGTATGTATGCATATATCCAGTCAGTCAATTCGATTCAATTC AGCATATATATGAATATGATGAATAAAATCGATTGGTGTGGTGTACAAATTAGATTTAGTACGT ACGTTCTGAGACCCTGGCTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACC CGTGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCTGGTCATCG GAGATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTCCAGCTCCT TGGCCATCACCTTGAACCTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCAC CTGCTTCTTCAGCTTCTTCCCCAGGAAGTTGGTCGGAGTGGACGCCTGCACATCCATTAATCTC GCAAGTAAGTATCCTCATTTAATTTGCAGCAAAAACATGTACTTATCAAGCTAGCTAGCTAGCT GCGTATGTATGTGTACCGGAGCTCCAACGGTGGAGGAGAAGGCAGCAGCCATCTTAATTTGCTG AAAGTCGATGATTGTAGAGGATCACTGATGATGGCCGGCCGCTGCTGCTCAAAGTGTAGAGGCC GAGCTGCGGTAGGCCTTAAATAATACAATAGAATTGGACGTCGCCATGGAAGTTGGAGGCTGTG AGAGGCACACACTCGTCCCTGTGGATCAGCTTCCAGATCCTCCACAGGCCACACGCTGAAGATT GGGTTCTGCACACGTGGCGCAATCTCGGCCGGCCGATCCACAGCATAGCATGACTTGGACCTGG ATCGGAGTCTGTGAGCGAGTTAGGAGTATATTGTATTAGTGTAGGTAGGAAGGATCTCTTGGCT TCAGTTCCTTGACCTTTCCTCACCACAGAATTCACCCATTTCTGATCAACTCTTTCTCTCTGTT TTTTCTTTTCTTTCCTTGCCTCACATTCGTCTCCCGGCCGGCAGCTAGCGACCAGTTGCTTCAT CAGCTCAGCTACTACATAACCTCTTCATTTTGCATCACCACAGAAAAGCCTTTTGCTGCCTCTC GTTGCCCGGCTTCTTGGATGAGGCATGGCATGCAAATTGTATTCTAGTTGGACTACCACAAATA TTTTGCTCTGCTACCTGCACATATTCTGCTTTCTCGATAACCATCAGGCTAGGACTGTCATTTG GCACCACACAAACTTCTCTTAACATACAACATAAGCATTGTACGTTTTTTCCCCTTTGATGGTT TCCGTTACCACAAAAATACAAAAATTCTAATTTTGCACTGCTGTTGATATTGTTTTTTGGTGAA GCATCAATCGGAGGCAGCTAAATCTGCAGCAGTGCCTTAAGATGAATTTATTTGTGGTTCATAG CTTTCGTTCCTCCTAAGCCTCTATATTGCTTTTCGTAACTTTTGAAAATTAATTGTTTGCTCAT GTCATGTCAGTAGTAATCTTTTATGCAAGTCATGTGAAATTTCTCCTAGCTAGCTTGTCCCTAC TAAGACGTTTGAGATGGAGGCAAGTGATTGGTAACGACACTTGTAAGGTCGAGTCTCCAGTACA TTGGAAAATAACAGTCATCTCACTAGGCAAGTACTAGCGCACATATTGGAATTGGATAACATTC CCCAACTTGTGCATCATTACAGATTTACAGTGATACGCTAATTGTTATCGTGCAACATGATGAA TAGCACAGGAACTTTGATATAGCATGCATCTGTAGTAACAAATGCAACCCGCAAGTTGAGAATA CATCCATATATAGGGAAGTGGATTTGGATCCCTCAAGGAAATATTCCCTCGTTGATTGCATGTC ACTCAAGTGGTTATGAAAAAAATTGAGAAGATATATTAACATGTGATATATCACTCTACAAACA TGCAAATAAAAATTCAACTTCGACATCTCGTAACGAAAAAAACAAATTTAACTCTGAATATACA TTAACTAGCTGTTGTTTAATTTGTATTTTTCATTACAATTTGTAGAAGTTGAACTTGAACTTGT ATATTTGTGGAGTGTTATATCACATGTTAATAGACCTTCTCAATTTTTTTTCAAATTTTTTTAT AATCATTTGAATGACATGCAAATAACTAGGGGATATCCCCGTATATAGTCAGCATGTGTATATA TCAATCAGCGATATGATGGCACATCCACAGTATCCAGAGATCGTACGTATCGTTGCATATGCAT ACAGTACTGCTAGTACACTAGTGGATAATTAATGAACTATGTGACAAACGATTGGATTATGTGC AAAAATACTAATAATGTATTAGTATATGACAAGTGTAATTTCACCACATATCACATACTTCGAG GTATTAAAATTTGTAGTGTAAAATTTTAGTATGTACTATACTTTAAAAATTCTCATACGATTAA TTTAAATAATACTAGTTAATTTGGGTGCAGTAGTGACAAATTAAACGTTCCTCTTTGTTAAGGG TACAGGCTATATAGGGTGCGAAGTACAAGGAAGCATATCGATGGTGTTCATATATATATATATA TATATATTCATTAATCAAGTGCAAAATTAAGAAGCTGGTGGTGAATTGGTGATGGATTGAGTTC AGTTGTAGACGCAGCTGCCGTCGTCGCTCCTGGCGGTAGGGTCGTAGTTGGCGGCGCGTTGGTC GGTGCATCCCGCCGGCACGGGGACGGGCGACTGCTGCTCGGCCTTGCCGTAGAACTCGCCGGAG TCGTGGTTGGCGTCTCCGAGCGCCGCCTCGCTGAGGTACTTATCGGCGAGCCGCACCCTCTTGA CGTTCTCCTGCTCCCTCACCAGCATGTGCCGGCCCGTACTCCATCAGCTTGTCGATCGTCATCT TGGGCTGCTCCAACTCGATCCGGCGGAGTTCACCAGCCTCCTGCCGATGTTCTCCACCCCGATC TCCGCCACCCACCGCCGCACCTCGTCGCCGTACACCCGCGCCCGCAGCGCCCCGAAGAAGTCGA TGGGAACGCGTCGGGGACCTTGTCGCTGCGGAAGATGCCCCTGCACACGCCAATGCGGTCCTCG CGGGTGGGAGCCCAGTAGAACTTGTCCATGCGCCCGTCGCGGATGAGCGGGAGAAGTCGTTGCC GGTGACGATGATGGGGACGGGGGTTGTACATCCCTGGGAGCTGCACGTTGGTGGGGTTGTCCGC GATGTTCATCAGCGTCGCGTTCACCATCTGGTTGTTCACCGTGTACTGCGTCGTGCCGCCCCGC GTCCAGGTCGTTGATGAACAGCACGCACATCTTCCCCTTGTTGATCATGTCCGCCGCCTCGCGG TACCGCTGCCGGATCAGCTTCGCGGGCTCTCCGGCGCTCATCATGATGAGGCTGCATGCATGCA GTTGTACTACTATTACAACACACGCAGCATGCAATGCAGTTGTACTTCCTACTCTCACTTGATC CCCATCTTGGCGAAGACGAGATCACACTGGAACGACTTGCCCTGGATGTTGGGCAGCTTCATCA A

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.248978784

Conservation Information
Conserved circRNAs	NA
PMCS	0.248978784

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						this study

circRNA

Detail information of Os11g0707000_circ_ag.8

Address

Any questions?

Supported by