Detail information of Os11g0175500_circ_g.2


General Information
CircRNA Name Os11g0175500_circ_g.2
ID in PlantcircBase osa_circ_008680
Alias Os_ciR7219
Organism Oryza sativa
Position chr11: 3750875-3753695  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os11g0175500
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11
t0175500-01);Zinc finger, RING/FYVE/PHD-type domain containing p
rotein. (Os11t0175500-02)
Parent gene strand +
Alternative splicing Os11g0175500_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0175500-01:9
Os11t0175500-02:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCCTCTCTAGATTACAGAAAGATGTATACAGCAATCAGGCAAAGCATTGCAAGCTATAATCT
CAGAGTGGATAGTGAAGTTTGACAATAAGGAGCTTGggcatctgttgtacacctttgatataac
aggcctgaatgaccaggacaaaactaatatcaaggtattttgttgaaatgaatgttgatcaaca
acaacctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCATCTGTTGTACACCTTTGATATAACAGGCCTGAATGACCAGGACAAAACTAATATCAAGGT
ATTTTGTTGAAATGAATGTTGATCAACAACAACCTCGGTGCATAAACGTCACTAACTTTTATTT
AAATGATGATGTCAGATTGTGCTGGATATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGT
GGCATGATGTTGTTACTGTTGCTCCATGCCTCCACAACTTCTGGTACTTTTGCCAATTTTCCTA
GCTATTTTTGATTTATCTCAAAATTCTGATTGGTGCTCATTTCTGTATTCCTTTTAAGCAACGG
TTGCTTCTCTGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCC
TGTCCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGGAATCACTTCCTACATAATATTGAAG
AGGTGTGATAGTTGTGTTTAGTGACTTAACTCCTCAATACTGTTTAAGTGCTACCTATTGTACA
GCTGAGATGTTTATTATAGTTCTGCTTTTGTAGGCTATACTGCAAGCTTTTTCATCGCTACAGC
GGTCTGATGAGGAGATTGCATTGTTGGAGTCATATGCCTCGGTCAAGACAAATATTGTGAGTTA
AAAATCTTACTAAGAAATTGTTGATTTCCACCATTTTCTCAATGGATTGTATAAAGTGTTGCAC
CAGTCTCTTATCTGCCAGCACTGATATTTGTCCCTGTTATCTGCCATAAAATCGAATATTGTTT
TAAAATCATCACCCTTTTTTAACTTGTTTATATATTGTTGTTCATTTTAGAGAAGTGCCTTCCT
CAGTCATTTGTTATTAGTTGCTGATAAATATTTAGTTTTGCTGTTGATAGCTTTTGAACTTTAA
AAAGCTTGTAGTTAGCCTTCCCTACAAATAAAAAATGGCAGCTTGTAATTATGGACAATTCAAG
GCCTTTCTCATGATAATGTGATGTTATATATAAATTGAAGGTTGCATGAGTTTTGTCATAAAAT
ATTGTTGGGGCTAATTTTAATTACTCAATTCATATGAAATTTAATTGTGAAACTTTATCTAAGT
AGGCGCAGCAGTTGTATTTTAACATTTCTGCTATTCAGTCTATGATGTATTTTAACCTAAAATT
CACAGGCATGGCATGCATTCATCCCTTTTCCATGGTCTTATGCTGGTGCGATGATTCTTAGATC
CACCATGGGGATAAACATCTGTCAGAGGGAGGTCAGATGGCAACGACTCAAAGTAGAACAGAGC
TAGGTGAAGTAGGGTACAATTGAGGGAGCAATAGATCTATAATAGCTTGCCATGAGAGAGACCA
GAGCTGACTAGAGACTTGTTTATTCATCTTAGCTTAACGGAAATGTATAATCCCCATCCTTGTG
ATAATTTGACCCTGAAGCTTATCTCTAAAATAAGGAATAGATACCAACCCAATCTAATCTGTTA
AAATCAACTGGCATGAACAGTACCCCTGAACATGACAATTTGTCTGTCTGATGGATAAAATGCC
TTATTATTAGAGCCAGTTGAGTCACAGGACAATTAATACCCGACTCACCAAGGTTATAGGTGTT
TTCTATGCTATAATATATATGTTGCAAGTATATTTGTTTTGGTATTTAAATGATCAGTCCCATG
ATTCTGAGTTGCTGTCAATGTTCATACCTTAGGTTTTGGGGAAACAGAAAATCCAGTCAAGGAA
GCGCCGTTTGCCACGTTCAAATGATGAAGCTAACCATACTAACCATGCTGATTTTCTATGCCCT
CAATGTGGTAAGTGTTGAAATTTCATTTTTAATATTTTTATTCTTCTTTTTAGACATGTTACTC
AAATGAGAAAAATAAATGCAGGTGCTGAATTTGGTGGATTTAGGTGCAGTCCAGGTGCTCCACA
CTTGCCGTGTAATGGATGTGGAGGAATGATGCCAGCCAGACCTGACACCAGTATACCACAAAAA
TGTAACCGATAATTCTGACCATATTACAAGATTGTAATTCTATAATTCAGTTGTTATTTGATTG
ATTATTCAACGTAACCATGTGTGCTGCCGTTATGTTAGGAACTGGACATATCTATGTTCATATT
TTTTTCTTGCCATACTAATATGCTTGGTATCAATTAGATGAGCTAAAATTATTTTTATTACATA
ATTGAGGAGTATGATAGATATGCACGATTGCCTCAAGATGTATTTTGAAGTTTGCAGGCATCAT
GAGTAGCTTGATTGCACCTTTTCCCTACTGAATGTTTATGAAAATTATATCCTCTGTATTCTTT
TTAATTTTCTGGCTCTAATCTATCAACCTTATATTGCAGGTTTGGGATGTGATAGGGCATTTTG
TGGAGCTTATTGGTGTTCCCAAGGAGTGAATTCAAGTCAGCATAATCCAATCTGTGATCAGGAA
ACTTTCAAGATGGTAAGATAATCTATTACTTATATCTTTTAGACCCCACTGTACTCCATCATCA
TACAGTACATGTTGTGTACTTATATTCACTGTTTGACATGTTGTGTGGATAACTGCATAACTTT
GCAGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAGTACATGGAGGCAATCAATACGAG
AAAGATGTAGGAAGTTTTAACATGATCTTATACTATCATATTGCTCCTTTTATACCCCAGATAG
TAGTTTCACATGTGAGTACTGAGTATAGTATTTTCTCCTCTCTAGATTACAGAAAGATGTATAC
AGCAATCAGGCAAAGCATTGCAAGCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGA
GCTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.111017145
Functional Information
Coding potential Y
Potential coding position 3752821-3753692(+)
3751054-3753491(-)
Potential amino acid sequence MMPARPDTSIPQKCLGCDRAFCGAYWCSQGVNSSQHNPICDQETFKMISQRHISSVPDTVHGGN
QYEKDITERCIQQSGKALQAIISEWIVKFDNKELGHLLYTFDITGLNDQDKTNIKIVLDIENAK
CSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSSANSRDKSQSAACPQCRTAVQSVGRNHFLHN
IEEAILQAFSSLQRSDEEIALLESYASVKTNIVLGKQKIQSRKRRLPRSNDEANHTNHADFLCP
QCGAEFGGFRCSPGAPHLPCNGCGGMMPARPDTSIPQKCLGCDRAFCGAYWCSQGVNSSQHNPI
CDQETFKMISQRHISSVPDTVHGGNQYEKDITERCIQQSGKALQAIISEWIVKFDNKELGHLLY
TFDITGLNDQDKTNIKIVLDIENAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSSANSRD
KSQSAACPQCRTAVQSVGRNHFLHNIEEAILQAFSSLQRSDEEIALLESYASVKTNIVLGKQKI
QSRKRRLPRSNDEANHTNHADFLCPQCGAEFGGFRCSPGAPHLPCNGCGGMMPARPDTSIPQKC
LGCDRAFCGAYWCSQGVNSSQHNPICDQETFKMISQRHISSVPDTVHGGNQYEKDITERCIQQS
GKALQAIISEWIVKFDNKELGHLLYTFDITGLNDQDKTNIKIVLDIENAKCSICLNLWHDVVTV
APCLHNFCNGCFSEWLRRSSANSRDKSQSAACPQCRTAVQSVGRNHFLHNIEEAILQAFSSLQR
SDEEIALLESYASVKTNIVLGKQKIQSRKRRLPRSNDEANHTNHADFLCPQCGAEFGGFRCSPG
APHLPCNGCGGMMPARPDTSIPQKCLGCDRAFCGAYWCSQGVNSSQHNPICDQETFKMISQRHI
SSVPDTVHGGNQYEKDITERCIQQSGKALQAIISEWIVKFDNKEL(+)
MLHFAFSISSTILILVLSWSFRPVISKVYNRCPSSLLSNFTIHSEIIACNALPDCCIHLSVISF
SY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015