Detail information of Zm00001d020843_circ_igg.1


General Information
CircRNA Name Zm00001d020843_circ_igg.1
ID in PlantcircBase zma_circ_005469
Alias pollen_test_circ_001811
Organism Zea mays
Position chr7: 134475964-134480827  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d020843_circ_igg.2 Zm00001d020843_circ_g.1
Support reads NA
Tissues pollen
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGTCGCCATGGTTGTGGCACCGATGGCCGAGGCAAAGTCCGCTGATGCCCCCTCCGCCGACG
CCCCCGCCCCCGCTGCTGACGCACCTGCCGATGGACcctagcgggccggctgctgcacctggcc
cccagggtgtcgaaggcctgtcaggcaatgaggatgacgatgatgactccaccaactgaggcca
cacatgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTAGCGGGCCGGCTGCTGCACCTGGCCCCCAGGGTGTCGAAGGCCTGTCAGGCAATGAGGATG
ACGATGATGACTCCACCAACTGAGGCCACACATGTCGGCCCGGTTAAATTTGGAACAAGACATG
GAAGAAAAATGAGAGCAATGTCTTTAAAACCATGAATCCATAATAATGTGTGGTCATCCATGGA
TACATCCTTGCTCTCCCTCTTTTTCTTTCTGTTTGATTTTCAATGTGTTATCATGTTGTTAGTT
AACTGTATCGACTCATGGTATCAAGGTCTAAAAAATTATCGTCGTTCTTGTGTTCTTGAGCCAC
TGAGATTTTGAGACAGTGAACGATTCATCAATCACAACGTTGGTTTTAGTCTTCCCTGCATCTC
GTGCTGCACAAAAAAACGTCTTCTTGGCCCTTTGTTCACAATTATTCGAATTCCATTTATATTT
TGGGGAGGGGGAGGGGGGCATTATCTAAGCTCTAGACCCTTTTCTGAAGCTCTAACACACAGCT
TGCAAGGCCAAAATACCATGAACGTACTACCTAAAAATTGCCGGTATTTAACGTCCATGTAATA
TCATTTTTGTAATAGCATACACAATGTTCTTAGCCATTATATGCTTTAACTGACCTTACAGTGG
GTAAGCCGTGACTTGATATAACTAACCATAAGCAAAGTGTGAGAAGCCATGATTTACCAAACTT
TAGCGTGCCTAATAAATATTTACCGTATTTTTATTTTATTTTATATGACACATGGAGTGCATCA
TAATCTACCTACCCAAAAGGCACAAGTATGTGTGCATCAAGCTGTTTCAAAGAAAATATGCTAG
ATTATCACTAAAATATGTGCTGTCATTAAAATGCGCCAAGCCATCATCATATAAGCGTTGACTT
TCCATAGAGTCTAATACAGAAGACAATTTTCTTTTGTTTTGCAGTCATGTAATAGGAAACCATA
TGATATTTTTTTATATGTTAGAGCTCTTAAAAAGGGGTTTCTCTACATAAATGTAATTAACATA
ATTTTTATATAAACATAAGAATTATAAAAGTATGGACTCACAACACATATACTTTATTTATTTG
TACCATTTAAATTAAACAAAATTAAACTTGTCTGTCACGCGGAGGCAAGGCCGTTTGGCCAACC
GAATCGGTGTTTGTTAGGCTATCTCTAGCAACTTTTATGTCTCATCTCTTATCGTATTGTATAT
TTTAAACTTCACTCTTCAAACAATGTCAAACAATATTATCTATAGTATCGTATCCTTAGATCAT
ATTTCGCAAGTTTGTGTGGCTATGTATTGGCTGCTTGCCCGAATGACACAGTTGTAGTGATAGC
AAAATTCTTTTAGGCCACATGTCGTAGAGTAAAAAGTATAGCAATATTCTTTTAGTTATGATAG
AGTGTGACTTCTAAGGCTATGTTTGGTTTCTTTAGTCTAGGGACTAAAATTTAGTTAGAGGACT
AAACTTTAGTCCCTAACATGTTTGGTTTTATGGGATAAAAATAGTAAGAATATACTATATGACT
CATAAGAAGACTAAAATGGCCTTTAACATTCTCTTGCTATTAGTACAATTGAACTAAATGAGGG
GTAAATGTGGAATTAATATGGTTTAGTCTCTTTTAGCACATATGTGAAGGATTAAATAAAGACT
AAATCATTTTAGTCCATATTTTAGTCCTAATGTTTGGCAAAAAAAGACTAAATAAGACTAAAAA
CTAGAGACTAATCTTTAGTTCCTCTAACCAAACCCCCCTAAATTAAGGATATATTTCGTTGCTA
GCCACACTTTATCACACTTTACCTTAGCCAGTGTTGACTAATTTAGAAGTTTGTTTGACGATTA
AAGTTGGGCAAGAATTTTTAGGCTGATGCATGACTTTATGTAGACAAATTCAATTCATGTTTAC
CGTTAGTGCAACGACTGTATATTCATATAATATATTTTGGTATAGATTGGGCATTCCAGGCCTC
ATAAATTTATTTGACATGCATATTCGTATATTTATTTAACGTAGACAATGCAATTTCGATGATA
TGCACAGCCGCTGTTTGTATTAATCGTAGGGAACATTTAAGAAACATGCCTCACATTCATTACT
CGTATCCACTAACAAGACCATATACCGGTTGATTGGTTCTGTATCAGGTGAGCATGGCACGTGA
GAAACGCAGTTTTTCGGCGTATCTATTCATGCAACAAGGATATTTGTTTTTGGCCTACGTTGCA
TCTGTGACTGTGAGTGCAGTCTCAATCTCTCTCTATGCGGTTAACCAAACAACGACTGCTCCTT
AGTCAACGCACACGCTCAACCCGTATAGATATGCACATGTTACCAATCATGAGGATAGTAATAG
AACACGTTGCATACAAGTAAATGAGTTGCGCTTAGGCTATCCGCAACCGGTACCCCTAAATTTT
TCCCCCTATATCACCTTTTCCCCCTATTTTTTCATCTCCCGCAGTGGTTCTCCCTAAATACTCT
CCCTATACCCCACTACAACTATAAAATATCATTTTCTATATCAACTAACAATTTTTTATTTACT
AACAATTACTCGTGGATCCACAGCACAGTGTTTAGGGGATTAACAGTGACACGCTAGATCTAGG
AGGAGAGAGAAGGAGGCCAGCGTGTAGGAGGCGTTGTAGGGGGCACCGCTGCGGCCGTAGAGTG
CCCCCTACAGGCCACATGCAAGAGAAGGGGGCTGCGTAGTGGCTGCCGTTGCAGTTAGTCTTAT
ACGACTTGTACCGTGATGACCAAGCCCAACGCCAGCAAGGCCGAATTCGTGCGCGTCGTGGGCT
CGTGGCCATGTTGCATGCGGGCTATGTGTTCTGTTATTTGCATTTTCCTTTTCATTTTTTTATG
AGATTTTATTTTCCTTCTTTCTTTTTTTCCTTTTTATTTTCGGACTATTTCTGTTTGTTCATTA
GTTGGTCGTTGCACCATCCGTTTCCTATGCTGTATTTCTAGGTAAGGATACATAAAAAATATAC
CTGTATCAGTATCATGCAACTATTTGGATAATAATCAGTTGCATGGATGACGGACTTTTTTTTT
TGCCTATTACCAGGTTAAGAATAACAAATTTATGACGTCATGTATTTCCGTATTTGTATGCATA
ATTTAATATTCCATTCGTCCTAAAATATAATTCGTTTCAGATTAAGCCTATCTTTATTCAGTAA
GGCAGTAACCTATAAATATAATTTGTATGTATATATATATTTATTATCATCTATATGAATGTGG
ATGGAAAAAATGAGAGCTATAAAAAGCTATATTTTAGGACCGAAAGAGTACATCTTTTATTTAA
TGTTTCTCTTTGAGCTTTCCTGGAACCCACTCTTTGGAAATTATGGTGTATACGACTAAGCTTA
TTCGATTTGGTTAAATCTATATCGATATTTGTAGTATTTTGGATCTTTTAGCCATGGCGCCGTT
GCAGGTTATCATGGCGTGGAATTTGACATTAAGAAACTATTTTTGATTTAGTTTATTATAAAGT
TAGTCAGAGATACCTTTAGATTATGCAAACTGACTTGATGCTTCAGAATAGATGATCTGTTTAT
TTTTATTTGGAGTATGTAGTTGGACTCTGTTACATGTGCCCAAACATATAATTATTTTTTATGA
GCTTAATTTAATTGGTTTTAACTTTGCTAGCATGACTGAATATACGCACCGCTTCTCTTTTGGG
GCACAATTTCATTTGATCATACAATTATTTGTTTAATTTGATAGTAGCCAAGACATATGTATCT
TTCTTTTTTTTAGCATGCAAGACGGTGTGCCCCCATTTTCAAAAGGAATTTGAAGAGCCTGAAC
TGCCTGGCTTAAAGCATCTCCAACCATAAGTTCTAAACAAGAGTCCTAAAACTTGAAAAAGAAC
CCGGTTTAAAATGTTTAAGGCTCAATTAACTTTTTTAACTCCAACGGTGGACCCTATAATAAAG
TGTTTTTTTGGTTTTTATCCTTACCTGTCAAAGTATTGGAGTCATTTTTTCTGTTTTAACTCCA
AAAGCAGTTTCATCGGTTGGAATAGAGGGAAATAAAAAGATAGAGCCCGAATTGATGGGTACTA
TATATGGCAGCCACTATATATAGGACCCCAACCAGGCAACCATCGAGTCCTTAATCTAGTTGAT
AAAAAATTAGTAAATTAGGACTCCTATTGGAGACAATTTTTATAACTTGAGCCCAATATTTAAA
TTTAGGACTCAGTTTGAGACTTCTGTTGGAGATGCTCCGGCTAAAACATATGCAGATTTGTTTC
GATATAAAACCAATTTGTGTTCATATCTATTTTACCATGAACACCCAAATTTCACTTAGGCACA
TTTCTCCTTTTTACAATTTTACGGTGGCTCATGATAATTGAAGTTGTTTAGCCACCACGATGTA
TATTTTGATTAGGCCAAATCTTATTTTGATTAGGCCAAATCTGTGTCAACGACCCTCACTCCCT
CGGTTGAAACCCAAGTCTCGCACACTTTGCATTGGGGCTTTGTCTGACTGCTACAATCACGCTA
GGCCGCATACGCCATGGACGGCCAAAGGTTCCCTACCTATAATAGCCCGCCTCCACCACCATAT
AAACTTGGCCTCACCACCCTCGTCCCTCACCGCACCACAACAAGCATAGAGACACCAAGCGTCA
AACTTGCCAAGCAGCTAGCAACCAACCCAAGAAAGCTAGACACCATACCCATGGCTCGCGCTAG
CGTCGTCTTCGTCATTGCTACTCTCCTCTTCGTCGCCATGGTTGTGGCACCGATGGCCGAGGCA
AAGTCCGCTGATGCCCCCTCCGCCGACGCCCCCGCCCCCGCTGCTGACGCACCTGCCGATGGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.015358392
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018