Detail information of AT2G36810_circ_g.9


General Information
CircRNA Name AT2G36810_circ_g.9
ID in PlantcircBase ath_circ_016908
Alias 2:15431532-15432094
Organism Arabidpsis thaliana
Position chr2: 15431532-15432094  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G36810
Parent gene annotation Protein SHOOT GRAVITROPISM 6
Parent gene strand -
Alternative splicing AT2G36810_circ_g.2 AT2G36810_circ_g.3 AT2G36810_circ_g.4 AT2G36810_circ_g.5 AT2G36810_circ_g.6 AT2G36810_circ_g.7 AT2G36810_circ_g.8 AT2G36810_circ_g.10 AT2G36810_circ_g.11 AT2G36810_circ_g.12 AT2G36810_circ_g.13 AT2G36810_circ_g.14 AT2G36810_circ_g.15 AT2G36810_circ_g.16
Support reads 1/2
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G36810.3:3
AT2G36810.1:3
AT2G36810.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCAACGCCATACTAACCTAATAAATCAATAGCAGTTATAACAGCTTGTTTTGCTGTTTGTTG
CCGCACATGAAGAAGCCGTGAAAGCATATTGGTGCCcttcatgacacgatttcgagtttcaatg
gtcagctttggttccacagagacaagtgttgtgcatgcattcagagcgagtgcctgtacaaatt
tattagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATGACACGATTTCGAGTTTCAATGGTCAGCTTTGGTTCCACAGAGACAAGTGTTGTGCAT
GCATTCAGAGCGAGTGCCTGTACAAATTTATTAGAAAGAGAAATGGTATCTGCCTCTTCGAAAG
AAATGTCACATGGTACAGATTCTTGACATAAAGTGTACTACCTGAGTGTGTAGAACTTCGAGAC
TAGATTCTGCAAAACCTTCATTTTCATCTCGGCCCATCAAAGTCAATATATAATCAAGCATCTG
ATCTCTTCTTTTCAATGGGAATGTAGCACCAGTTTCTGCAGCATTTATGACAGCACGACCTTCA
CACAAAGATACAAAAGATCAGGGTCCTATATCCTCTTTCCCTAAAATTATATCCATACCATGTA
GGCAGTGTAACTTGATAGAAAAAATCAAAGAGAGGAAAGAAACCGATCAGTCATTGAATGAATG
ATTCCATCATCTACATTTCAACGCCATACTAACCTAATAAATCAATAGCAGTTATAACAGCTTG
TTTTGCTGTTTGTTGCCGCACATGAAGAAGCCGTGAAAGCATATTGGTGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.160489639
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5014b
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020