Plant Circular RNA Database

Detail information of AT2G36810_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT2G36810_circ_g.8
					
						ID in PlantcircBase
						ath_circ_016907
					
						Alias
						2:15431325-15433206
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 15431325-15433206  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G36810						
					
						Parent gene annotation
						
							Protein SHOOT GRAVITROPISM 6
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G36810_circ_g.2 AT2G36810_circ_g.3 AT2G36810_circ_g.4 AT2G36810_circ_g.5 AT2G36810_circ_g.6 AT2G36810_circ_g.7 AT2G36810_circ_g.9 AT2G36810_circ_g.10 AT2G36810_circ_g.11 AT2G36810_circ_g.12 AT2G36810_circ_g.13 AT2G36810_circ_g.14 AT2G36810_circ_g.15 AT2G36810_circ_g.16 						
					
						Support reads
						1/1
					
						Tissues
						root;leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G36810.2:7
AT2G36810.1:7
AT2G36810.3:7

General Information
CircRNA Name	AT2G36810_circ_g.8
ID in PlantcircBase	ath_circ_016907
Alias	2:15431325-15433206
Organism	Arabidpsis thaliana
Position	chr2: 15431325-15433206 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G36810
Parent gene annotation	Protein SHOOT GRAVITROPISM 6
Parent gene strand	-
Alternative splicing	AT2G36810_circ_g.2 AT2G36810_circ_g.3 AT2G36810_circ_g.4 AT2G36810_circ_g.5 AT2G36810_circ_g.6 AT2G36810_circ_g.7 AT2G36810_circ_g.9 AT2G36810_circ_g.10 AT2G36810_circ_g.11 AT2G36810_circ_g.12 AT2G36810_circ_g.13 AT2G36810_circ_g.14 AT2G36810_circ_g.15 AT2G36810_circ_g.16
Support reads	1/1
Tissues	root;leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G36810.2:7 AT2G36810.1:7 AT2G36810.3:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTTGCAGGTATAGAAATGTCAGCCTGTTCGTACATCCAGTCAATCTTGTCACGAACATATGCT
CTATCATTAACTTTCTGGAGAAGTATTCCGATACACcttgtaagaaggatggcacacaagagag
tcacaagattgtctataaggggactaatgacatctgatggatcattaggcaaagcaaagaatcc
cagtgtag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 756
Transcript exons: 15431325-15431425,15431532-15431612,15431701-15431846,15
432013-15432094,15432389-15432524,15432918-15432997,1543
3077-15433206
CTTGTAAGAAGGATGGCACACAAGAGAGTCACAAGATTGTCTATAAGGGGACTAATGACATCTG
ATGGATCATTAGGCAAAGCAAAGAATCCCAGTGTAGCCTTCATGACACGATTTCGAGTTTCAAT
GGTCAGCTTTGGTTCCACAGAGACAAGTGTTGTGCATGCATTCAGAGCGAGTGCCTGAGTGTGT
AGAACTTCGAGACTAGATTCTGCAAAACCTTCATTTTCATCTCGGCCCATCAAAGTCAATATAT
AATCAAGCATCTGATCTCTTCTTTTCAATGGGAATGTAGCACCAGTTTCTGCAGCATTTATGAC
AGCACGACCTAATAAATCAATAGCAGTTATAACAGCTTGTTTTGCTGTTTGTTGCCGCACATGA
AGAAGCCGTGAAAGCATATTGGTGCCGACAAGTGCATCTATTCTGGCTTCAATAACTGATGAGG
GTGCATATTTTGCAGCATATCCATACATCAAAGCCAAAGCAGCGTGTATATCATCACTGTCTTC
TGTTTTATAGCTCTCAGAGAAGAGAGATAAGATCCTTTGGAAAATACTCTGCCCAACATTATCC
ACGATGATTTTCAGCTTTTCCAGTACAGTGTCCAAGTGAGAAGCCGCGACCAGCCCCATGGCCT
TCGCCAAACCCAGTCTATTTGCAGGTATAGAAATGTCAGCCTGTTCGTACATCCAGTCAATCTT
GTCACGAACATATGCTCTATCATTAACTTTCTGGAGAAGTATTCCGATACAC
						
					

						Genomic sequence
						
							CTTGTAAGAAGGATGGCACACAAGAGAGTCACAAGATTGTCTATAAGGGGACTAATGACATCTG
ATGGATCATTAGGCAAAGCAAAGAATCCCAGTGTAGCCTGTCCACGAAAACAAGTAAATCCAAG
AGAAAATGTATAAACAAAACAAACAGCACTAATCTCATTCTTTTCTTTTTATACTCGGTTCAAA
CGAGAAAATAATCACCTTCATGACACGATTTCGAGTTTCAATGGTCAGCTTTGGTTCCACAGAG
ACAAGTGTTGTGCATGCATTCAGAGCGAGTGCCTGTACAAATTTATTAGAAAGAGAAATGGTAT
CTGCCTCTTCGAAAGAAATGTCACATGGTACAGATTCTTGACATAAAGTGTACTACCTGAGTGT
GTAGAACTTCGAGACTAGATTCTGCAAAACCTTCATTTTCATCTCGGCCCATCAAAGTCAATAT
ATAATCAAGCATCTGATCTCTTCTTTTCAATGGGAATGTAGCACCAGTTTCTGCAGCATTTATG
ACAGCACGACCTTCACACAAAGATACAAAAGATCAGGGTCCTATATCCTCTTTCCCTAAAATTA
TATCCATACCATGTAGGCAGTGTAACTTGATAGAAAAAATCAAAGAGAGGAAAGAAACCGATCA
GTCATTGAATGAATGATTCCATCATCTACATTTCAACGCCATACTAACCTAATAAATCAATAGC
AGTTATAACAGCTTGTTTTGCTGTTTGTTGCCGCACATGAAGAAGCCGTGAAAGCATATTGGTG
CCCTGTAATACATGCAAACGAAATATGATTATGAAAATGGAATTTGAAAATAAACGTGGTGCGG
AGATAACAAAAACAAGGTCTCAACAGTTCAAACATAAATCACTGTCTGGTCACAAAAAAACTAC
TCGAATTTCCGACTCTTCATGATAATTTAATTTCATAAGATGAGTTTTCTTAGCAAGACTTAAA
GTCAATCTGACGCATAAGTTTATAACAGATTATAGAAAAAGAAGCAGGATGGAAGATTATAATC
TAATTAGAAATGCGATTCATTTGAAGGTTTAGAATCATACGACAAGTGCATCTATTCTGGCTTC
AATAACTGATGAGGGTGCATATTTTGCAGCATATCCATACATCAAAGCCAAAGCAGCGTGTATA
TCATCACTGTCTTCTGTTTTATAGCTCTCAGAGAAGAGAGATAAGATCCTACAATAAAAACAAG
AACATTAAGTCAGTGATATGTCATAAATTTTGTAAACCTGTTGTAAAAGTGACCAATTCTAGAA
TGCCTGGAAGCAACTAGATGACTAAGAAGAAGCTATTTTCTAATATTAGGAAACCTTTTGATAT
AACATTTTCTGCATGTGCCACTGTAGCTTTAAATGTCCAACTTAATACACACATAAGAAGAGTT
GGGATAAGCTAGAATTTAAGAACCTTTTAGATACAGCCTTCCACTACTGAAATATAAATTATGA
TCTAAAAGAGAGAAATAAACTAATAGGTTCGACAATGAGTGACAGATATGCAGGCATAACTAGA
TTTTTAACATTAGAAAGTATATGTGGTGATGATTTCAATAAGTCAAGCAAGATAAACCTTTGGA
AAATACTCTGCCCAACATTATCCACGATGATTTTCAGCTTTTCCAGTACAGTGTCCAAGTGAGA
AGCCGCGACCTACGCAATAAGTTAGCATATTAACATAGGCTGAAAATCAACATCTAAGAGAGAA
AAAAGGCAAGTACACTCAAAATACCAGCCCCATGGCCTTCGCCAAACCCAGTCTATTTGCAGGT
ATAGAAATGTCAGCCTGTTCGTACATCCAGTCAATCTTGTCACGAACATATGCTCTATCATTAA
CTTTCTGGAGAAGTATTCCGATACAC
						
					

			
		

Sequences
Splice junction sequence	ATTTGCAGGTATAGAAATGTCAGCCTGTTCGTACATCCAGTCAATCTTGTCACGAACATATGCT CTATCATTAACTTTCTGGAGAAGTATTCCGATACACcttgtaagaaggatggcacacaagagag tcacaagattgtctataaggggactaatgacatctgatggatcattaggcaaagcaaagaatcc cagtgtag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 756 Transcript exons: 15431325-15431425,15431532-15431612,15431701-15431846,15 432013-15432094,15432389-15432524,15432918-15432997,1543 3077-15433206 CTTGTAAGAAGGATGGCACACAAGAGAGTCACAAGATTGTCTATAAGGGGACTAATGACATCTG ATGGATCATTAGGCAAAGCAAAGAATCCCAGTGTAGCCTTCATGACACGATTTCGAGTTTCAAT GGTCAGCTTTGGTTCCACAGAGACAAGTGTTGTGCATGCATTCAGAGCGAGTGCCTGAGTGTGT AGAACTTCGAGACTAGATTCTGCAAAACCTTCATTTTCATCTCGGCCCATCAAAGTCAATATAT AATCAAGCATCTGATCTCTTCTTTTCAATGGGAATGTAGCACCAGTTTCTGCAGCATTTATGAC AGCACGACCTAATAAATCAATAGCAGTTATAACAGCTTGTTTTGCTGTTTGTTGCCGCACATGA AGAAGCCGTGAAAGCATATTGGTGCCGACAAGTGCATCTATTCTGGCTTCAATAACTGATGAGG GTGCATATTTTGCAGCATATCCATACATCAAAGCCAAAGCAGCGTGTATATCATCACTGTCTTC TGTTTTATAGCTCTCAGAGAAGAGAGATAAGATCCTTTGGAAAATACTCTGCCCAACATTATCC ACGATGATTTTCAGCTTTTCCAGTACAGTGTCCAAGTGAGAAGCCGCGACCAGCCCCATGGCCT TCGCCAAACCCAGTCTATTTGCAGGTATAGAAATGTCAGCCTGTTCGTACATCCAGTCAATCTT GTCACGAACATATGCTCTATCATTAACTTTCTGGAGAAGTATTCCGATACAC
Genomic sequence	CTTGTAAGAAGGATGGCACACAAGAGAGTCACAAGATTGTCTATAAGGGGACTAATGACATCTG ATGGATCATTAGGCAAAGCAAAGAATCCCAGTGTAGCCTGTCCACGAAAACAAGTAAATCCAAG AGAAAATGTATAAACAAAACAAACAGCACTAATCTCATTCTTTTCTTTTTATACTCGGTTCAAA CGAGAAAATAATCACCTTCATGACACGATTTCGAGTTTCAATGGTCAGCTTTGGTTCCACAGAG ACAAGTGTTGTGCATGCATTCAGAGCGAGTGCCTGTACAAATTTATTAGAAAGAGAAATGGTAT CTGCCTCTTCGAAAGAAATGTCACATGGTACAGATTCTTGACATAAAGTGTACTACCTGAGTGT GTAGAACTTCGAGACTAGATTCTGCAAAACCTTCATTTTCATCTCGGCCCATCAAAGTCAATAT ATAATCAAGCATCTGATCTCTTCTTTTCAATGGGAATGTAGCACCAGTTTCTGCAGCATTTATG ACAGCACGACCTTCACACAAAGATACAAAAGATCAGGGTCCTATATCCTCTTTCCCTAAAATTA TATCCATACCATGTAGGCAGTGTAACTTGATAGAAAAAATCAAAGAGAGGAAAGAAACCGATCA GTCATTGAATGAATGATTCCATCATCTACATTTCAACGCCATACTAACCTAATAAATCAATAGC AGTTATAACAGCTTGTTTTGCTGTTTGTTGCCGCACATGAAGAAGCCGTGAAAGCATATTGGTG CCCTGTAATACATGCAAACGAAATATGATTATGAAAATGGAATTTGAAAATAAACGTGGTGCGG AGATAACAAAAACAAGGTCTCAACAGTTCAAACATAAATCACTGTCTGGTCACAAAAAAACTAC TCGAATTTCCGACTCTTCATGATAATTTAATTTCATAAGATGAGTTTTCTTAGCAAGACTTAAA GTCAATCTGACGCATAAGTTTATAACAGATTATAGAAAAAGAAGCAGGATGGAAGATTATAATC TAATTAGAAATGCGATTCATTTGAAGGTTTAGAATCATACGACAAGTGCATCTATTCTGGCTTC AATAACTGATGAGGGTGCATATTTTGCAGCATATCCATACATCAAAGCCAAAGCAGCGTGTATA TCATCACTGTCTTCTGTTTTATAGCTCTCAGAGAAGAGAGATAAGATCCTACAATAAAAACAAG AACATTAAGTCAGTGATATGTCATAAATTTTGTAAACCTGTTGTAAAAGTGACCAATTCTAGAA TGCCTGGAAGCAACTAGATGACTAAGAAGAAGCTATTTTCTAATATTAGGAAACCTTTTGATAT AACATTTTCTGCATGTGCCACTGTAGCTTTAAATGTCCAACTTAATACACACATAAGAAGAGTT GGGATAAGCTAGAATTTAAGAACCTTTTAGATACAGCCTTCCACTACTGAAATATAAATTATGA TCTAAAAGAGAGAAATAAACTAATAGGTTCGACAATGAGTGACAGATATGCAGGCATAACTAGA TTTTTAACATTAGAAAGTATATGTGGTGATGATTTCAATAAGTCAAGCAAGATAAACCTTTGGA AAATACTCTGCCCAACATTATCCACGATGATTTTCAGCTTTTCCAGTACAGTGTCCAAGTGAGA AGCCGCGACCTACGCAATAAGTTAGCATATTAACATAGGCTGAAAATCAACATCTAAGAGAGAA AAAAGGCAAGTACACTCAAAATACCAGCCCCATGGCCTTCGCCAAACCCAGTCTATTTGCAGGT ATAGAAATGTCAGCCTGTTCGTACATCCAGTCAATCTTGTCACGAACATATGCTCTATCATTAA CTTTCTGGAGAAGTATTCCGATACAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.195183297

Conservation Information
Conserved circRNAs	NA
PMCS	0.195183297

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR5014b 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR5014b
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G36810_circ_g.8

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