Detail information of BGIOSGA034204_circ_g.2


General Information
CircRNA Name BGIOSGA034204_circ_g.2
ID in PlantcircBase osi_circ_009463
Alias Chr11:7954800_7959493(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 7034549-7039243  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA034204
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034204_circ_g.1 BGIOSGA034204_circ_g.3 BGIOSGA034204_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034204-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAAAAATTCAACTCACCATATCCTTCTGGATCCTTGGTAATGAATCTCATCAAATGTTCCGT
AGTGGCTAGATTTATATCACTGAAATAGTACTCCACccaattgctctccctgtgcatctggtgt
ttgcagtgcttcttctccatgtttctcatttgattggttagaagtggagacatcatcctctaca
ccatgtcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAATTGCTCTCCCTGTGCATCTGGTGTTTGCAGTGCTTCTTCTCCATGTTTCTCATTTGATTG
GTTAGAAGTGGAGACATCATCCTCTACACCATGTCCATCATTGATATCATGGCCACCCTTTTTC
CCTTTGCCTCCCTTTGTCTATACCACAAAAAAGGAACATTATATAAAGGTAAAGAGAATTCCTT
TCTTTTGCATTGTGCAAACAAATTAAAGAAGCATTTATGGCATGCATTAAACTACATAATCATT
TTGAGCTATGCAACCAATTTAAGGATAGCACTGCGCAAATAAATTAAGATAGCACTGCGCAAAT
TGATTACACTATATAATTGTTGCAGTGAACACAAACAAAAGAAAGGAAGGATTGATGGCATACA
CTAAACTGATGATGATGATTATGCCAATTGTTGTATACATATTACTGATAGAAAATAACCCAAA
TAGAAGGGGGATACTTGTTACTTGAAGTTCGAATTAAGTCTGAACATGGCATAAATTGCGCTCA
CAGAAAATTAACATGAATTGTCCACGCTGAGAACATAAAAACATGCTTATTTTGGCACTGAACT
GCTTGTGATCTTTTAGTCAAATGGCTATTTAGATAAATATGACTTCTCTGTTGATCTGCTGCCA
TGTTTATAATTTCTTGAGTAACTGGTTATGTTCACACATATTAGCAACAAGTTAAGATTATGAC
GTTGAAAGTTGAAACACGTCAACCTATATACCACGGTACCAAACTTTCCCTATATTCTTGCAAA
TGCATTCTCTAGACCTGTCTATAATATATTGGACAATATATGAGGTACAGGGTCACCAACTCCC
CATATTTGATCTGTTATTAATATTCGTGGAGAGTTGGGATCAAAGTGGGGTCACCTGCAAATTG
GGGGCATAACAACTGAAGTGTATTTCTTTTCAAGGTTACTTGTGCCATACTTGAGAGCAAATCT
GAAATGTAACGCTATTATGAGTGCACTAGTGCAATCCCCTAAATCTTGCGTATTTAAAGCTGGA
TAGATTAATGGACCTCATACTCTTATTAGATGTTCCAATGGATGTTAAGTGCCATACGATTGAA
TCCGTCCACATGGTTTGATCCATTCTAATAAGGATTAGATTTAAAATCATGGTCTCTTGCCATT
AAAGCAGATTCATACACGGCAAAACCAACTAAAGTTCTCTCAGACAGGTAAAGCAACACATACA
TAACAAGTGCGCATTAACATGACATTTGCATATGCACTTAAGCACCAAAGTACTGAACTCTCAT
GTGCAATTGACTAATCCAATGGTTACCATGCAAGTATTCAATAATCGAACTCTCAGCCCATTTC
TCCAGTTCCTCTCATCATTAAGTTCCACGATCTGCATAGGATGAAGAAAATATCAGAGATGATG
CATGTGCAACAGTGATTACCATGTTCATGAAAATATTACAATGCATCATGTAATGGTCCATACC
GCTTTCTCAGCATCCTCTACAGTATCGTACTCAACAAAAGCATGCAGCTGCCAACAAGGGGAAA
ATATATTAATCCAACAAGAAATCAATGACAAAAAGTGTAGCACATATGTCGGCCACAACAAAAA
TGGAACAAAGAAATAACCTTGTTAACAAGGAATATTATTCATTTGAGCCAAGTTAATTAATATC
TTATTATTACTTCCTATGTTTATCCATCATTTCATCTGGACCTACATCGAAAAAATAATGAAAT
ATTTCCCCCCTAAAAATACTGAAATGAAATAATGAATATGCATGCACATATATATAGAATATAA
AGTTTTTTTTTTCCTCAAAACACATCAGATAAAGCAAAATATCGACCGTGTCATGATTTTATTC
ATGCAATCTAGTGCAAACAGAATAACCATAGGTCAAGATGGCAATTGGGTTTCCAGAATTTCCT
GCACCATATAATCAGACTCTGAACCCCCAATCAAGGAACTGAGATGTCTCACATGCAAGGACCA
GTGTGTTGTAATGGAGTTAACCCACTCGGTTTTTTTCTAAATCCTCATTAGACTCTTAATTTCC
ATAAATCTTTTGGTAGTTGTATTATGCTCAATAATTATTGCTACTGTGCAAGAATACATTGTTC
AGGGAAGATTACTACAGGAATTACTAGAACTCAGTGATCAGTAACAAAGTGGTGTTTGAGTAAT
GGAAATATTAAAAGTAATTACCTTGTTAGCAAAAAGCATATCTAGCTTGGCAGATCTATTAGTA
ACTGGACCAGTGCCATTTGGGGTTTGAGGATAGCATGTTCGAATTGTCTTGACACTGGAACATA
ACAAAACATCAATCTAAATAGAAATATATAGATCAATTATTTTATGATCGAAAGGAAGAGGAGC
ATATTACATTGACCTAGATAAATCTTTACCTGCCAACAGTTGAAAAAAGCTTCATGAGATTCTG
GTAACAATGATCATCTGGAAGATTTTCTGCAACAACGATTCGGGCCTACAAGACAGGTGAAGTG
TTCACCTTACTGTCTAGCATTTTTTTCATAAAAAGCAATCTAGGATATGGTTACCTGGAGCTCT
TCTAAATCTGACTCTGTAAACGGTTGCTCACGTTTTACTCTTGTTCCATCATTACTAACAACCT
ACATGTATCGCCAAATAGTTATAAATTTATTGCAGGCATAAGCAACATGCATTTTGCAGAGGAA
AGACATAAGCAGCTGTAGTTGTATGTTGTCACTATTCTGATGCCAATGACTTACGAAGAATTGC
AACCCATTGGTAAACAAAACAACTTCAGAATAATACGTACTCCCTCCGTCCAGCAAAAACCAAC
ACCTGGCAATGAATCTGGACATAGGCTTGTCCAGATTTGTTGCCGGGAGTTGATTTATTTTCTA
GGGCGGAGGGAGTACATTACAAGATCAAGCATTAAAGCCACAGGATATAGGTATAAGTGTATAC
CACAATTGTAATGAAACTTACGAGTTTTGATGATGTCCGAAGAGCTGAAGCAAGCATTGCATTA
CTTTGTATCAAAGCCTTAATCTTCTTAAAGCCAGCAACAACTGATATCGGAACTGCATTAAGTG
AGATGACACGTCAGTTTTCCCTATAAAAAACAGATTTATATTGGCTTGCCCTAGACCAGTAGTT
TTATTTCATAACTTCTTCTGCTTATGTGAGTAACTGCCTTTGGTTTTTCAAACTCATTTTTTCC
TAGATCCACTTTATTAATTATATCATTTTTATAAACTTGCTTAGATACCAAACATAACTTGTTC
CCCACATATTAAATGTACAAACAAACTTCGCAAAAAGAAAATGAAGAAGTACTGAAATAAACAT
AATTAGAAAACTGAAATGTTGGAGTTGTCATCTGCACTGAGACTAGTTAGTTGAATAATAAAGA
GGTAGATTATAGTTAGCAACACAATACTATTGTTCTACTAATAGCTACTACCTCCGTCCCAAAA
TTTAGCTATTTCTAGCACAGTACCTTGTCCCAAAATAAAGCTATTTATCCACCTACCTATTCCT
CTCAACAAATCACAACTATTCTCTTTCATCTACTTTCTCTTCTCAACCAATCACACACTTCTTC
CAATCATTTCCACCTACTTTCTTAATACCCGTGCCAACCTAAAAAATGCTTACATTTTGGCACG
GAGGAAGTATGAGCTTAATTTGGAAATATAAGAAATAAATTACAAGGACTCATAGAAACCAGTC
CATTGCACACATATGAAATATGATAAGATATATAAAGATTTATGTTTTAATTTTGAACTAAAAA
CACTGTACCAGTTGGTTCCTTTACTACAAATTAAAATATAATGAATCAATCTTATCCTGATTAT
TTAACAAAAAAAATATCCTGTTAAGACACATACTCCCACCTGTAATTACATGTCGTTTCGAACA
TCAACTCAGTCTCCCACTCCCAAACGCAACTTTGGCCACTAATTTCTATTTGTAGTATATCCAT
AAAATCTACAGAAGTTACAATATTATGGAAGTACATTCAGGGACAACTTTACATATATGATTAT
CATGTATCCGGTCTATATTTGTTCAAAGATATTCATACTAAGTTTTGAAAGCTTGGCCTAATGC
TTCTTCAAAACAACAAGTATTTGTGAGCAGAGTGCATGAGAAAATGCATCTACCACATGAGCAA
TGCAAGATATTTAATAAAACATAGAAATTCTAGCATATGAGAATATAGTTTGTAAAGTTGATTA
AATTATCTTCATTGTCTTTGATGGTAAACATAATGTTGTTTCTAATGATGGAACAAAGGCTCTA
AATGTTAGTCCCTCCTAATAATATTTGTATCATCTGATCACTTTTGATTAAAAATTGTCACCTT
ACATTTACATATGCGTGCATTCCAACTTTCCCTGTACTTATTCCTCTAGCACTACACATTTGGT
CAGACAACGGCCTGTTGACTTAGTTTTCTAAGGCAGATCGGTCGCATTGGATAAAACCAAATGA
TTGTCTAGGTTAGCCTGTGTTGTCAAGTGTTACTGGTATTTGTGAAGAGAGGGGGTGCTATAAA
AGGAATAAAAAGAAACACGTATAATTTCATTCTGGAAGAGAAGGCTTCAGATTGAAAAATTCAA
CTCACCATATCCTTCTGGATCCTTGGTAATGAATCTCATCAAATGTTCCGTAGTGGCTAGATTT
ATATCACTGAAATAGTACTCCAC
Conservation Information
Conserved circRNAs osa_circ_008989
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021