Detail information of Os11g0248466_circ_g.1


General Information
CircRNA Name Os11g0248466_circ_g.1
ID in PlantcircBase osa_circ_008989
Alias NA
Organism Oryza sativa
Position chr11: 8020052-8024744  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os11g0248466
Parent gene annotation Hypothetical protein. (Os11t0248466-00)
Parent gene strand +
Alternative splicing Os11g0248200_circ_g.1 Os11g0248466_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os11t0248466-00:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAAAAATTCAACTCACCATATCCTTCTGGATCCTTGGTAATGAATCTCATCAAATGTTCCGT
AGTGGCTAGATTTATATCACTGAAATAGTACTCCACcaattgctctccctgtgcatctggtgtt
tgcagtgcttcttctccatgtttctcatttgattggttagaagtggagacatcatcctctacac
catgtcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATTGCTCTCCCTGTGCATCTGGTGTTTGCAGTGCTTCTTCTCCATGTTTCTCATTTGATTGG
TTAGAAGTGGAGACATCATCCTCTACACCATGTCCATCATTGATATCATGGCCACCCTTTTTCC
CTTTGCCTCCCTTTGTCTATACCACAAAAAAGGAACATTATATAAAGGTAAAGAGAATTCCTTT
CTTTTGCATTGTGCAAACAAATTAAAGAAGCATTTATGGCATGCATTAAACTACATAATCATTT
TGAGCTATGCAACCAATTTAAGGATAGCACTGCGCAAATAAATTAAGATAGCACTGCGCAAATT
GATTACACTATATAATTGTTGCAGTGAACACAAACAAAAGAAAGGAAGGATTGATGGCATACAC
TAAACTGATGATGATGATTATGCCAATTGTTGTATACATATTACTGATAGAAAATAACCCAAAT
AGAAGGGGGATACTTGTTACTTGAAGTTCGAATTAAGTCTGAACATGGCATAAATTGCGCTCAC
AGAAAATTAACATGAATTGTCCACGCTGAGAACATAAAAACATGCTTATTTTGGCACTGAACTG
CTTGTGATCTTTTAGTCAAATGGCTATTTAGATAAATATGACTTCTCTGTTGATCTGCTGCCAT
GTTTATAATTTCTTGAGTAACTGGTTATGTTCACACATATTAGCAACAAGTTAAGATTATGACG
TTGAAAGTTGAAACACGTCAACCTATATACCACGGTACCAAACTTTCCCTATATTCTTGCAAAT
GCATTCTCTAGACCTGTCTATAATATATTGGACAATATATGAGGTACAGGGTCACCAACTCCCC
ATATTTGATCTGTTATTAATATTCGTGGAGAGTTGGGATCAAAGTGGGGTCACCTGCAAATTGG
GGGCATAACAACTGAAGTGTATTTCTTTTCAAGGTTACTTGTGCCATACTTGAGAGCAAATCTG
AAATGTAACGCTATTATGAGTGCACTAGTGCAATCCCCTAAATCTTGCGTATTTAAAGCTGGAT
AGATTAATGGACCTCATACTCTTATTAGATGTTCCAATGGATGTTAAGTGCCATACGATTGAAT
CCGTCCACATGGTTTGATCCATTCTAATAAGGATTAGATTTAAAATCATGGTCTCTTGCCATTA
AAGCAGATTCATACACGGCAAAACCAACTAAAGTTCTCTCAGACAGGTAAAGCAACACATACAT
AACAAGTGCGCATTAACATGACATTTGCATATGCACTTAAGCACCAAAGTACTGAACTCTCATG
TGCAATTGACTAATCCAATGGTTACCATGCAAGTATTCAATAATCGAACTCTCAGCCCATTTCT
CCAGTTCCTCTCATCATTAAGTTCCACGATCTGCATAGGATGAAGAAAATATCAGAGATGATGC
ATGTGCAACAGTGATTACCATGTTCATGAAAATATTACAATGCATCATGTAATGGTCCATACCG
CTTTCTCAGCATCCTCTACAGTATCGTACTCAACAAAAGCATGCAGCTGCCAACAAGGGGAAAA
TATATTAATCCAACAAGAAATCAATGACAAAAAGTGTAGCACATATGTCGGCCACAACAAAAAT
GGAACAAAGAAATAACCTTGTTAACAAGGAATATTATTCATTTGAGCCAAGTTAATTAATATCT
TATTATTACTTCCTATGTTTATCCATCATTTCATCTGGACCTACATCGAAAAAATAATGAAATA
TTTCCCCCCTAAAAATACTGAAATGAAATAATGAATATGCATGCACATATATATAGAATATAAA
GTTTTTTTTTTCCTCAAAACACATCAGATAAAGCAAAATATCGACCGTGTCATGATTTTATTCA
TGCAATCTAGTGCAAACAGAATAACCATAGGTCAAGATGGCAATTGGGTTTCCAGAATTTCCTG
CACCATATAATCAGACTCTGAACCCCCAATCAAGGAACTGAGATGTCTCACATGTAAGGACCAG
TGTGTTGTAATGGAGTTAACCCACTAGGTTTTTTTCTAAATCCTCATTAGACTCTTAATTTCCA
TAAATCTTTTGGTAGTTGTATTATGCTCAATAATTATTGCTACTGTGCAAGAATACATTGTTCA
GGGAAGATTACTACAGGAATTACTAGAACTCAGTGATCAGTAACAAAGTGGTGTTTGAGTAATG
GAAATATTAAAAGTAATTACCTTGTTAGCAAAAAGCATATCTAGCTTGGCAGATCTATTAGTAA
CTGGACCAGTGCCATTTGGGGTTTGAGGATAGCATGTTCGAATTGTCTTGACACTGGAACATAA
CAAAACATCAATCTAAATAGAAATATATAGATCAATTATTTTATGATCGAAAGGAAGAGGAGCA
TATTACATTGACCTAGATAAATCTTTACCTGCCAACAGTTGAAAAAAGCTTCATGAGATTCTGG
TAACAATGATCATCTGGAAGATTTTCTGCAACAACGATTCGGGCCTACAAGACAGGTGAAGTGT
TCACCTTACTGTCTAGCATTTTTTTCATAAAAAGCAATCTAGGATATGGTTACCTGGAGCTCTT
CTAAATCTGACTCTGTAAACGGTTGCTCACGTTTTACTCTTGTTCCATCATTACTAACAACCTA
CATGTATCGCCAAATAGTTATAAATTTATTGCAGGCATAAGCAACATGCATTTTGCAGAGGAAA
GACATAAGCAGCTGTAGTTGTATGTTGTCACTATTCTGATGCCTATGACTTACGAAGAATTGCA
ACCCATTGGTAAACAAAACAACTTCAGAATAATACGTACTCCCTCCGTCCAGCAAAAACCAACA
CCTGGCAATGAATCTGGACATAGGCTTGTCCAGATTTGTTGCCGGGAGTTGATTTATTTTCTAG
GGCGGAGGGAGTACATTACAAGATCAAGCATTAAAGCCACAGGATATAGGTATAAGTGTATAAC
ACAATTGTAATGAAACTTACGAGTTTTGATGATGTCCGAAGAGCTGAAGCAAGCATTGCATTAC
TTTGTATCAAAGCCTTAATCTTCTTAAAGCCAGCAACAACTGATATCGGAACTGCATTAAGTGA
GATGACACGTCAGTTTTCCCTATAAAAAACAGATTTATATTGGCTTGCCCTAGACCAGTAGTTT
TATTTCATAACTTCTTCTGCTTATGTGAGTAACTGCCTTTGGTTTTTCAAACTCATTTTTTCCT
AGATCCACTTTATTAATTATATCATTTTTATAAACTTGCTTAGATACCAAACATAACTTGTTCC
CCACATATTAAATGTACAAACAAACTTCGCAAAAAGAAAATGAAGAAGTACTGAAATAAACATA
ATTAGAAAACTGAAATGTTGGAGTTGTCATCTGCACTGAGACTAGTTAGTTGAATAATAAAGAG
GTAGATTATAGTTAGCAACACAATACTATTGTTCTACTAATAGCTACTACCTCCGTCCCAAAAT
TTAGCTATTTCTAGCACAGTACCTTGTCCCAAAATAAAGCTATTTATCCACCTACCTATTCCTC
TCAACAAATCACAACTATTCTCTTTCATCTACTTTCTCTTCTCAACCAATCACACACTTCTTCC
AATCATTTCCACCTACTTTCTTAATACCCGTGCCAACCTAAAAAATGCTTACATTTTGGCACGG
AGGAAGTATGAGCTTAATTTGGAAATATAAGAAATAAATTACAAGGACTCATAGAAACCAGTCT
ATTGCACACATATGAAATATGATAAGATATATAAAGATTTATGTTTTAATTTTGAACTAAAAAC
ACTGTACCAGTTGGTTCCTTTACTACAAATTAAAATATAATGAATCAATCTTATCCTGATTATT
TAACAAAAAAAATATCCTGTTAAGACACATACTCCCACCTGTAATTACATGTCGTTTCGAACAT
CAACTCAGTCTCCCACTCCCAAACGCAACTTTGGCCACTAATTTCTATTGTAGTATATCCATAA
AATCTACAGAAGTTACAATATTATGGAAGTACATTCAGGGACAACTTTACATATATGATTATCA
TGTATCCGGTCTATATTTGTTCAAAGATATTCATACTAAGTTTTGAAAGCTTGGCCTAATGCTT
CTTCAAAACAACAAGTATTTGTGAGCAGAGTGCATGAGAAAATGCATCTACCACATGAGCAATG
CAAGATATTTAATAAAACATAGAAATTCTAGCATATGAGAATATAGTTTGTAAAGTTGATTAAA
TTATCTTCATTGTCTTTGATGGTAAACATAATGTTGTTTCTAATGATGGAACAAAGGCTCTAAA
TGTTAGTCCCTCCTAATAATATTTGTATCATCTGATCACTTTAGATTAAAAATTGTCACCTTAC
ATTTACATATGCGTGCATTCCAACTTTCCCTGTACTTATTCCTCTAGCACTACACATTTGGTCA
GACAACGGCCTGTTGACTTAGTTTTCTAAGGCAGATCGGTCGCATTGGATAAAACCAAATGATT
GTCTAGGTTAGCCTGTGTTGTCAAGTGTTACTGGTATTTGTGAAGAGAGGGGGTGCTATAAAAG
GAATAAAAAGAAACACGTATAATTTCATTCTGGAAGAGAAGGCTTCAGATTGAAAAATTCAACT
CACCATATCCTTCTGGATCCTTGGTAATGAATCTCATCAAATGTTCCGTAGTGGCTAGATTTAT
ATCACTGAAATAGTACTCCAC
Conservation Information
Conserved circRNAs osi_circ_009463
PMCS 0.206746866
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017