Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0223700_circ_g.4 |
ID in PlantcircBase | osa_circ_018599 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 6470981-6473268 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0223700 |
Parent gene annotation |
Armadillo-like helical domain containing protein. (Os03t0223700- 01) |
Parent gene strand | - |
Alternative splicing | Os03g0223700_circ_g.2 Os03g0223700_circ_g.3 Os03g0223700_circ_g.5 Os03g0223700_circ_g.6 Os03g0223700_circ_g.7 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0223700-01:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.123950372 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6472175-6471015(+) 6472074-6470983(-) |
Potential amino acid sequence |
MRHVSPVEHDCCEKCGLSRIQDDESDETLQLCAHELPTLIEQPHLKDQRVHLGVDRRCHSSMPR TEAVASGDHKVF*(+) MVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAIS VIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQFLAYL NDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGALIVRR LCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSCGKDLF QSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRL QLLEPGKHTWLLKTLYGLLMLLPQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHH FHHLVSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALN LILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLG EEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQFLAYLNDIFDP LLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGALIVRRLCILLG AEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYAS WCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPG KHTWLLKTLYGLLMLLPQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |