Detail information of Os03g0223700_circ_g.4


General Information
CircRNA Name Os03g0223700_circ_g.4
ID in PlantcircBase osa_circ_018599
Alias NA
Organism Oryza sativa
Position chr3: 6470981-6473268  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0223700
Parent gene annotation Armadillo-like helical domain containing protein. (Os03t0223700-
01)
Parent gene strand -
Alternative splicing Os03g0223700_circ_g.2 Os03g0223700_circ_g.3 Os03g0223700_circ_g.5 Os03g0223700_circ_g.6 Os03g0223700_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0223700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCAGTTTCAAAGGCTTTGTAAGAGAGCTCACCGCATCTGAAGGATCAGAGAGTGCATTTAG
GAGTGGATCGAAGATGTCATTCAAGTATGCCAAGAActgaggcagtagcatcaggagaccataa
agtgttttgagaagccaggtatgttttccaggctcaagaagctgcaaattttattaaacaaatc
attggagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGGCAGTAGCATCAGGAGACCATAAAGTGTTTTGAGAAGCCAGGTATGTTTTCCAGGCTCA
AGAAGCTGCAAATTTTATTAAACAAATCATTGGAGTACCATATCATAGAATAGTATCATCAGAA
CATTCAATTCTCCATACTGCTATACGCCTATACCACAAGTAAGATAACAAGAACAGTGCCCATG
TCACCAAAGATTCATAAACTACTACTGACACAGTGTCAGTGTGACACATCACATAAACTGAATA
ACACATACATATGGGCTTTACAGCATTTGTACTGAATGTGGAAGCATTAGGAGATATCAAAAAG
TTTAAATAAAATGCAAACCAAAAAACAACTACTCCCTCCGTCCCAAAATATAACAACTTTTAGC
CCTCAGGATTTGTCCCAAAATATAACAACTTCTCCAACACTCTTTCCAACCAATCACAACCCTC
CACCATTCACTTTTCCCACCTACCTCCACTACTCATCCAATCACAACCCTCCACCACTCACTTC
TACCTACTTTCTTAATAACCGTGTCCAACTCTAAAACTTCTTATATTCTGGGACGGAGGAAGTA
GTTTCATATCAACCGAATGAAACAAAGATGAGGTATTATTGGAAAATGGAGCTCTACCTGCAAA
CGTAAGTAAGCAAATACAGGAGTCTCTAAAAGACGGATTAATTTGTCTAGTTGCACGAGAAACT
TCACATTTATATCTTCCTCTCCCAAAGACTGGATAACAGAAATTGCATGATTGTATGCCTACAC
ATGTTGGAAAAGAACATCCAAAGATCAGTGCCCAAGTAAGAAACACAAACTGCAAAAGTTAGAA
GTTGGTCATTACCTGCGCAAGTAGACACAAGCTTATTGTAGCCATCGGAGAGTGACACCAAGAA
GCGTATAAAGATTGAAATAAGTCCTTGCCACAAGAATCAACCAATGTTTTCTTAAGAAGAGAAC
GCAGCTCAGCAAGTTCGGTTGATGTGAGCAAAATTAAATTCAAGGCCTACAAGAAATTTAACAG
TTACGGAATGTCTACAGTTAAATTAGGCAGTAGTATAGTGTTGCAACAGTGGGGGATACCTGAA
CCATGGTGGATGCAAATTCAAGGTCACCTTCGGTCTCAAGAATAGTAGAGAACTCTCGATAAAC
TTTTTCAGCACCCAAAAGAATACAAAGTCGACGAACTATCAATGCGCCACGTCTGTATAAGTAT
GTCATAAACCATTGTTTGGTAAGCAATTTATGTAATAGTGAACTGTGTAACCCTAAAAGTAGGA
CTAATAACAAAGAAACATATACTATGTAATCAACTTTTGAGTGGGGAAATGTGCATACTTCTCC
AGTAGAACATGATTGTTGTGAAAAGTGTGGATTAAGTAGGATACAAGATGATGAAAGTGATGAG
ACTCTTCAGCTATGCGCGCATGAACTTCCAACACTAATAGAACAACCTGCACATGAAAAAATGT
GATGACAATAGCCAAGCTCTCTGATACGGTACAACAAATTTATTGAATTAGCAAAATATTAATG
GTCAATAACCCTATAAAGCCATCAGCCCATCAGTCATTTATTGAACTATGATGCAAAGGGTTAG
CATGATTTTTCCTTTTTGGTGGCAGTGGTGGTTGGGGGGATGTGAAGGTTATTTATAGCTATCA
TATAATTGTGTCAAGCCCAGGTGACAATGGAGAAGTAGACTTTATTAAGATTTATGAAACAAAG
GATATTACAAATCCAATGGCAAGAACAGCAGGTGTTTTTCTTTTTGGAAGGGAAACAACAGCAA
ATCTATCCTTGCCAACAGCAAGCGAAAATGGATTCAATCATTGCCAACGCCAACACTGAAAAGC
ATCCCATTATGGTTTCTATACTGCAAGCGCAATCATGTCTGTGTAATTGTATATGTTTTGGAAA
GCCAAACACTCAGATGGCTGATATAGGGCCATGAGGGTTACTTATAAAAAAACATTTGAAGGGA
TGAAGTAACCCCTTGGTATATTATCCATGGAAGAAAGAATAGGCCCACGATGCACTAAATTTGC
ACCAAGTCAAAAAATAAATTAGCACACACTGTTCTCACTAAGTTAAACCTTCATTGATTTTATT
TCAAGACTTGGTCACAGATCATTTGTATAACAAATAAAGCAATTAATCAGCTGCTCACAGAAAG
TTGTAATGAAAAGGTGCAGTTTCAAAGGCTTTGTAAGAGAGCTCACCGCATCTGAAGGATCAGA
GAGTGCATTTAGGAGTGGATCGAAGATGTCATTCAAGTATGCCAAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.123950372
Functional Information
Coding potential Y
Potential coding position 6472175-6471015(+)
6472074-6470983(-)
Potential amino acid sequence MRHVSPVEHDCCEKCGLSRIQDDESDETLQLCAHELPTLIEQPHLKDQRVHLGVDRRCHSSMPR
TEAVASGDHKVF*(+)
MVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAIS
VIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQFLAYL
NDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGALIVRR
LCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSCGKDLF
QSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRL
QLLEPGKHTWLLKTLYGLLMLLPQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHH
FHHLVSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALN
LILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLG
EEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQFLAYLNDIFDP
LLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGALIVRRLCILLG
AEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYAS
WCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPG
KHTWLLKTLYGLLMLLPQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017