Detail information of BGIOSGA033469_circ_ig.3


General Information
CircRNA Name BGIOSGA033469_circ_ig.3
ID in PlantcircBase osi_circ_008726
Alias Chr10:24382483_24383027(MH63RS2), Chr10:24867359_24867903(ZS97RS2), Chr10:24382483_24383027(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21557964-21558508  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033469_circ_ig.1 BGIOSGA033469_circ_ig.2 BGIOSGA033469_circ_ig.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGACGAACGCATGCTCTACGTGCTGTGATTCATGTCGCCCTTGAAGGTTTCCCGCACGAAA
ATGTGGTGAAATTTCGCCCAATTCCTGAAGGAACAGggtgctttttccgacagagacaagccta
tgttcatgctcttgcaagtcacagaaggagaaggctgagaagcaaaagaagagggtgacaatgc
attgagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGCTTTTTCCGACAGAGACAAGCCTATGTTCATGCTCTTGCAAGTCACAGAAGGAGAAGGCT
GAGAAGCAAAAGAAGAGGGTGACAATGCATTGAGGAAACTGGACTGGTAGCTGTGTTGTCATCG
TCATCGGACCACCTTGTTGCCATCTTTCGCACTGAAAGAAAGCCCCAGTTCAACTCCATACATG
TATGACATGGCAAACAGGAGAGCTGAATTGCAAGGTGAATGAATGTCCTGCAAATTTGCAAATT
CTGCAACCTAATTTGCTCAAAATTTACTAATGCAGGTAGGATACAACATCACTCGAAGATGTGG
GGACTAGCTCAGGTGGGCTTCACTCGCTTAATTGGTAGGTAGTGCTGTGCTCGGCTAGACGTCT
CCTTTACTGGTTGTTTCACATGATGAGCAGCAGTTCTGTTGGACCTACGGCTATACGTTGCCAT
CGACGAACGCATGCTCTACGTGCTGTGATTCATGTCGCCCTTGAAGGTTTCCCGCACGAAAATG
TGGTGAAATTTCGCCCAATTCCTGAAGGAACAG
Conservation Information
Conserved circRNAs osa_circ_008074
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021