Detail information of Os10g0567500_circ_ig.2


General Information
CircRNA Name Os10g0567500_circ_ig.2
ID in PlantcircBase osa_circ_008074
Alias Os_ciR5168
Organism Oryza sativa
Position chr10: 22495379-22495922  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0567500_circ_ig.1
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGACGAACGCATGCTCTACGTGCTGTGATTCATGTCGCCCTTGAAGGTTTCCCGCACGAAA
ATGTGGTGAAATTTCGCCCAATTCCTGAAGGAACAGgtgctttttccgacagagacaagcctat
gttcatgctcttgcaagtcacagaaggagaaggctgagaagcaaaagaagagggtgacaatgca
ttgaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCTTTTTCCGACAGAGACAAGCCTATGTTCATGCTCTTGCAAGTCACAGAAGGAGAAGGCTG
AGAAGCAAAAGAAGAGGGTGACAATGCATTGAGGAAACTGGACTGGTAGCTGTGTTGTCATCGT
CATCGGACCACCTTGTTGCCATCTTTCGCACTGAAAGAAAGCCCCAGTTCAACTCCATACATGT
ATGACATGGCAAACAGGAGAGCTGAATTGCAAGGTGAATGAATGTCCTGCAAATTTGCAAATTC
TGCAACCTAATTTGCTCAAAATTTACTAATGCAGGTAGGATACAACATCACTCGAAGATGTGGG
GACTAGCTCAGGTGGGCTTCACTCGCTTAATTGGTAGGTAGTGCTGTGCTCGGCTAGACGTCTC
CTTTACTGGTTGTTTCACATGATGAGCAGCAGTTCTGTTGGACCTACGGCTATACGTTGCCATC
GACGAACGCATGCTCTACGTGCTGTGATTCATGTCGCCCTTGAAGGTTTCCCGCACGAAAATGT
GGTGAAATTTCGCCCAATTCCTGAAGGAACAG
Conservation Information
Conserved circRNAs osi_circ_002971* osi_circ_008726
PMCS 0.206734099
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015