Detail information of AT2G07560_circ_g.1


General Information
CircRNA Name AT2G07560_circ_g.1
ID in PlantcircBase ath_circ_013034
Alias 2:3170845-3171027
Organism Arabidpsis thaliana
Position chr2: 3170845-3171027  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G07560
Parent gene annotation ATPase 6, plasma membrane-type
Parent gene strand -
Alternative splicing AT2G07560_circ_g.2
Support reads 4/3/8/7
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07560.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAGATCCAGATGACTCCACACCATCCCCATCCACAACCTTTGATTCTCGCAAATTCCCAATG
CGCATAAGTAGCTATTAAGGTTGCAATcctattttcaatcatgttgttccaagctttgccacta
agggtatagcgagtgataaacttgaggatatcaagaggaatgtatgtgacgatac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 183
Transcript exons: 3170845-3171027
CCTATTTTCAATCATGTTGTTCCAAGCTTTGCCACTAAGGGTATAGCGAGTGATAAACTTGAGG
ATATCAAGAGGAATGTATGTGACGATACTGTAGATCCAGATGACTCCACACCATCCCCATCCAC
AACCTTTGATTCTCGCAAATTCCCAATGCGCATAAGTAGCTATTAAGGTTGCAAT

Genomic sequence CCTATTTTCAATCATGTTGTTCCAAGCTTTGCCACTAAGGGTATAGCGAGTGATAAACTTGAGG
ATATCAAGAGGAATGTATGTGACGATACTGTAGATCCAGATGACTCCACACCATCCCCATCCAC
AACCTTTGATTCTCGCAAATTCCCAATGCGCATAAGTAGCTATTAAGGTTGCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.291998732
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020