Detail information of AT2G07560_circ_g.2


General Information
CircRNA Name AT2G07560_circ_g.2
ID in PlantcircBase ath_circ_013035
Alias 2:3170845-3171059
Organism Arabidpsis thaliana
Position chr2: 3170845-3171059  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G07560
Parent gene annotation ATPase 6, plasma membrane-type
Parent gene strand -
Alternative splicing AT2G07560_circ_g.1
Support reads 2
Tissues flower
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT2G07560.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCCCCATCCACAACCTTTGATTCTCGCAAATTCCCAATGCGCATAAGTAGCTATTAAGGTTG
CAATCTGTACGTTATTGTGCATGGGAAAGAAAAAAAcctattttcaatcatgttgttccaagct
ttgccactaagggtatagcgagtgataaacttgaggatatcaagaggaatgtatgtgacgatac
tgtagatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTATTTTCAATCATGTTGTTCCAAGCTTTGCCACTAAGGGTATAGCGAGTGATAAACTTGAGG
ATATCAAGAGGAATGTATGTGACGATACTGTAGATCCAGATGACTCCACACCATCCCCATCCAC
AACCTTTGATTCTCGCAAATTCCCAATGCGCATAAGTAGCTATTAAGGTTGCAATCTGTACGTT
ATTGTGCATGGGAAAGAAAAAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.192638373
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020