Detail information of Os01g0338600_circ_g.4


General Information
CircRNA Name Os01g0338600_circ_g.4
ID in PlantcircBase osa_circ_001643
Alias NA
Organism Oryza sativa
Position chr1: 13321477-13321655  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0338600
Parent gene annotation Similar to cysteine sulfinate desulfinase/cysteine desulfurase a
nd related enzymes. (Os01t0338600-01)
Parent gene strand -
Alternative splicing Os01g0338600_circ_g.1 Os01g0338600_circ_g.2 Os01g0338600_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCCCAAACATATTTACAGAAACTACTAGGCAAAAACTGACTTTGTTAAATTGAATGGACACA
ATAGAAAAAGGAAAGAGAAAGCCACtaagatcattctataatataaataatttcatacatgtta
tgctatttatcattcattggatgaggatgaacagcatggaagatatctgtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 179
Transcript exons: 13321477-13321655
TAAGATCATTCTATAATATAAATAATTTCATACATGTTATGCTATTTATCATTCATTGGATGAG
GATGAACAGCATGGAAGATATCTGTTGGCCCCAAACATATTTACAGAAACTACTAGGCAAAAAC
TGACTTTGTTAAATTGAATGGACACAATAGAAAAAGGAAAGAGAAAGCCAC

Genomic sequence TAAGATCATTCTATAATATAAATAATTTCATACATGTTATGCTATTTATCATTCATTGGATGAG
GATGAACAGCATGGAAGATATCTGTTGGCCCCAAACATATTTACAGAAACTACTAGGCAAAAAC
TGACTTTGTTAAATTGAATGGACACAATAGAAAAAGGAAAGAGAAAGCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.382857588
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017