Detail information of Os01g0338600_circ_g.1


General Information
CircRNA Name Os01g0338600_circ_g.1
ID in PlantcircBase osa_circ_001640
Alias NA
Organism Oryza sativa
Position chr1: 13320203-13321876  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os01g0338600
Parent gene annotation Similar to cysteine sulfinate desulfinase/cysteine desulfurase a
nd related enzymes. (Os01t0338600-01)
Parent gene strand -
Alternative splicing Os01g0338600_circ_g.2 Os01g0338600_circ_g.3 Os01g0338600_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os01t0338600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAGAGAATCCTCTATTCCTTGACTCCTTTCACCATCTTCATGCCCATCTCTTCGCATGTATC
CGCAGAGAAACTATACGAGCACAATAAAAACAGCCCctgctcgcttcaattagtggcaaatggt
catattgaggcttctcaattaagttttgtacctacaaaatttcaaaatcccaccaattcatatt
cagcttac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTCGCTTCAATTAGTGGCAAATGGTCATATTGAGGCTTCTCAATTAAGTTTTGTACCTACA
AAATTTCAAAATCCCACCAATTCATATTCAGCTTACCATATGGACAAAAGATTAGCTTTACATG
GTAAAGTAAAACAATGATGTTTTCTGCAGAGGTACATTGTTGGAATTCAATAAAAGTTACGGTG
AAGGTCTGGTCAGCTTCTAAGAACTGTCGGATACTTTAGATGGTGTATGAAGAATTCATGATAC
ATTTCATTCTCACACCATCTATAATACCCTGAACTCATATCCTTAAAAAAATGATGTTCATGTT
TGATAAAGATAGCTAGGAAATATCCAAAGAATACAAAAAGACCATGAATACCTGATGTAAGACC
GAACCTATGGCAAACCAAAAGGATAGAGGACTGGAGATGACAAGACAGAATTTTAGCATAATTG
ATTAAACAACCTTTTAGTAATAGAGGAACACTACTAAAGAAATGCATGCTTTTCTGGGTTCCAA
GGGGCCTCATTTCTAAGTTCTGGTGAAAACTCTGCTGATAATGGAAGCACATGAATTCATGAGT
CACAATTGCAAGCTATTTAATTGGTGTGGTAGTGATAATCATCTACTTTGACCATAATAAAGAT
TCTATAAACACAAATCGTCCACAAGTTGATCAAAGGATTCAGAGTCCATTTTCTCCCATTTGAC
ATGGAGTTCCCACTTAATAAATCCTTCCCATAACTTATTGCCAAAAATGTTGGGACTTCTGTGC
CTATAGCAGCATCTAGCAATACAAAATCACAGAAGAGAAACTGGTCCATGTAGAGCTCTCTAGT
AAAAGATTTTGATAAAAATGGAACAGGTAAGAAATGATCAATTCGGGACTGGAATATCATGAAA
TCTTACTTTAGATAAAAGCTCTTGACTTTCAGGAGGTTGCTTCTTTAGACTTTGAGGTAAAATT
ACAGTGAGCAACTCTGGCTTTTCAGCCCTTAAAGCACCCCGGATAACAGCTGCATTAGTCCCAG
AAGCACCAGATGTGAATATATGATTTTTCTGCAGCCAACAAATAATATTAATTAGAGTAGTACA
TGAATCAAATATTGGAAGAACTATTATACCATAAGACTCTGTGACATACCGTTATGACCATAGC
ATAGCTCAGGATCTCAATAAGCTGTTGATGCATAAACCCCATGTTACGGGTACCAAAAAAACCT
ATAGCCCGCGGTCCCTGTTGCTGAATAGCCAGCAACTCCTGCATTACCACTAAGTGAATAAGAT
CATTCTATAATATAAATAATTTCATACATGTTATGCTATTTATCATTCATTGGATGAGGATGAA
CAGCATGGAAGATATCTGTTGGCCCCAAACATATTTACAGAAACTACTAGGCAAAAACTGACTT
TGTTAAATTGAATGGACACAATAGAAAAAGGAAAGAGAAAGCCACCTGCAGGTAATCTAGATCT
GGAATCGACTTATACTCTGGAGTAGCAACCGTCGCAGTACCCCTAACAAGTGTCTCAACTTGAG
TAGGAATATTTGAACCATTATCATCGTCTGGCCCAAACATAAGAGAATCCTCTATTCCTTGACT
CCTTTCACCATCTTCATGCCCATCTCTTCGCATGTATCCGCAGAGAAACTATACGAGCACAATA
AAAACAGCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.150944076
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017