Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d044648_circ_g.4 |
ID in PlantcircBase | zma_circ_001607 |
Alias | circ1827 |
Organism | Zea mays |
Position | chr3: 233940724-233944973 JBrowse» |
Reference genome | AGPv4.38 |
Type | ei-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d044648 |
Parent gene annotation |
Alpha-L-arabinofuranosidase 1 |
Parent gene strand | - |
Alternative splicing | Zm00001d044648_circ_g.1 Zm00001d044648_circ_g.2 Zm00001d044648_circ_g.3 Zm00001d044648_circ_g.5 Zm00001d044648_circ_g.6 Zm00001d044648_circ_g.7 Zm00001d044648_circ_g.8 Zm00001d044648_circ_g.9 Zm00001d044648_circ_g.10 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d044648_T006:6 Zm00001d044648_T003:11 Zm00001d044648_T001:7 Zm00001d044648_T005:11 Zm00001d044648_T004:11 Zm00001d044648_T002:7 Zm00001d044648_T007:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.014234969 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |