Detail information of Zm00001d044648_circ_g.4


General Information
CircRNA Name Zm00001d044648_circ_g.4
ID in PlantcircBase zma_circ_001607
Alias circ1827
Organism Zea mays
Position chr3: 233940724-233944973  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d044648
Parent gene annotation Alpha-L-arabinofuranosidase 1
Parent gene strand -
Alternative splicing Zm00001d044648_circ_g.1 Zm00001d044648_circ_g.2 Zm00001d044648_circ_g.3 Zm00001d044648_circ_g.5 Zm00001d044648_circ_g.6 Zm00001d044648_circ_g.7 Zm00001d044648_circ_g.8 Zm00001d044648_circ_g.9 Zm00001d044648_circ_g.10
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d044648_T006:6
Zm00001d044648_T003:11
Zm00001d044648_T001:7
Zm00001d044648_T005:11
Zm00001d044648_T004:11
Zm00001d044648_T002:7
Zm00001d044648_T007:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTTGTGAAAATGAGACTTAGACTTACCTTAGGTCCACTACGTGATGTTCTGTCAAATGTGCT
CCTCATGTTAAACAAAGTCTTAGAATCAGTATAGACcatggaaatcatacaaatccgcaggatg
gtcaagtggtctagatgaaccatcacagtttgaaatcatctgaatgtctggataggcctctctt
atagcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGGAAATCATACAAATCCGCAGGATGGTCAAGTGGTCTAGATGAACCATCACAGTTTGAAAT
CATCTGAATGTCTGGATAGGCCTCTCTTATAGCATTGTAGAATTTGAGGTAATTACCTGTTTAA
CAGACATAAAGACTATCATTCCATGCAACTAAAAGCAGGCTTAATATGTACAAAAAAAATGTAG
GTGAAGTATTTCCTTTGTCGACTTCCACTGGGAGTTATGTTCAGTTTAAAGTCTCTTTGCTAGT
ACAGAGACATCAAGTACATAATTGCCACTGTGCTGAAGACCCCTTTTTTTTTACGAAACTTGTG
GAGAAGACATTTTCAACTTATTTAAAGGAAGCAAATACAAATGTAGTTGATAAGTTTACCACGG
TAGAACTTTTTCCCGCAATCTTCATTTCCAATTGCGACATGTTTGACCAGGAAAGGTTCAGGGT
GCCCCATTGCAGCCCTAACAGAGCCCCATGTTGAATCTGCACTCCCCCTTGCAAATTCCAGACT
GTCCAATACATCCTGTAGAAAACAAACAGTTCAATAAAATTAAAGGTAGAAGAATTATAAGTAT
AAGAATTACCTAAGTCAATAGGAGATAATGGTATCTTATTGAGTCTGTTACTATTCATATAAAC
AGAATTAATTAGTTCATGGACAATCTTGGTAAAGGTGAGCGTATAACTCAAGTTAAGCGTCATC
TCGGCATGTGAACTACCTGAATGAAAAGTAAAGGGTCACCCACTACTGTTATATCTTTTTCAGC
ATTCATGAAGACAACTAAAAGAGAATAAAACTTCAGCATTATTCAAAACTGATAATATGTGTTG
CTTTTTTTATGGGGTGTGGGGTGTCCCCGAGTGTGCAGTGCCTTCTTCAGGACATCGAGGAGGC
AGATGTGTGGTGTAAGGCAGGTGCTTCAGGCCTGCGTGTCATCTGGCCTCCTTAGGTTTTTTAG
TGTGGTGGTTGTTGAGTTGAGTTCTTCCTAACGAATGTTTTTCTGTATCTTCGTTTGTGGCCAC
TGTGAGGTGGTGCTTCTATACTGACCTACTTTGGTCCTTATTTCTTTCTTCTTAATATAAATAT
ACACAGCTCTTCTGCGTGTTCGATAAAAAAATGTGATGGTTCTCACTGTTATCTGAGCAATAAA
GTTTTAATCTTTTTTTTTCTCAGATACACAGGATTTGTATTAACGAATAAGTTCTAATCTTGGA
TATGGTTTGTAGCTAAAAAAAAAGACAAATGATATTATAATATCTAAGTATTTATTTACAATGG
TAATTTGCACCCATGGCTGAGAAAGTACAACACATTAAAAAAATGAAGGTCCTTATATCATTAT
ATCAATAAATTTTCAAGGCTGCTTAGTCTACTCGAGGTATAACTAGGGAGCTAAAAAGATACCT
TTACAAAAGGGGCAATAGCTACAGTATCAACTTCATCATTGTGGCTTATTCCTGAGTTATAAGA
GAGAAATTCCATCAGTTTAGAAGCCCCGTGTTGATAAAAGATTTAACAAATCTGAAAACAATTA
CCATTGTTGAATACCCATATTGGGGCAGCACCCAGGTCCTCCGCAAGCTTTGACGTAGATTTCA
ATATAATACTTAGGGGGTCATGATAGGAAAGAAAAATAAATAAAGTGAAGCAGTGTAAACTGGT
ACCTGAAGGAACTCATAATATCCAAGCCCATCATCAGTCCAGTAATGCCAAACATCCCCGAAGT
GTCCAGGCCTCTCTTCCCATGGACCAATTGATTCTCTCCATCTGAATGCATTTCTTAGCCAGTC
ACCTTCTACAAAACAACCTCCTACAGTAGTCGCATGGAATCTATCAAATATCTGAAACATCTAT
GAACACGTAATATATGTCCAAACATGAAGAACTTGATTTTAAATGTGAAAACACAGTGCATACC
AGGAAACCTCAAGAATCGTGGTTTCAAATCCAAAAGCATGGATATAAGTTCTGTGCGGAAACCA
TGTCCCTGTGTGTACAGAGAGAACCAGCTATAAATATTCAGGTAAAGTTTTGCACAGTGAGAAT
TACCATACACTAGAAAGAGATTGTTTTTGTTTCTAGGTCTTTGGCAAGATAAATGAATCTAATA
CATTTGGTACACTAAATAGATAGCTAACATATAAATTCAGACACACAGGGTATCCATCAGAAAC
AATTAATTGGTGGTTACACTCATCAAACAAACCAAAGCAGTGAACTGGGTGCCATACCATCCTT
GTATTGTGGTTACTGATCATCTCATCCTTATAAGCTGGCTGCTGGCCACTTATCACCAGCCACC
ATTAACACAAGATAATTTTTAAGACGAAGAAACCTCTTAAGCATCTCTTAAGCATTACAATATG
TCAATATGTGATGGAAACATTGTACCGGCAGCAGCAAGAAACTTGCGGTCAGTATACTCATTAA
ACATTGACAGCCACATACCGTGATTCATGATAAAGTTCTTTACCATGAAGGCATCCATCGACAA
TTTGTTTAATCCACAGGAGGCTGTCGTTCTCACCATCAATGTACCATCATCCCGTACAGTAGAT
GGTGATGAACATGCAAAGCAAACACGTACAGGAGAAAGGAAACCAACCAACACCAAGCAAAAAC
CTGATGTGGTTTTTATTTCATGAAGCAACAGTACGTAGTACGTTATCCTGTATCGTGGTACACC
AGTACAAAGCCTTTTTTATCGATCAAGATCGCTAACAGCACACCACACTCCACACCCTCTGGTT
GCTGCCATCCGCGCGCTGTTTGTGTACTGTAATGTGCAGCACACACATCATATCTCCGCCACAA
GCTTGGGCTCAGCCAGCGCCAGATCGAAGGCGGTGAAGGAGTGAGGAGCCAGCGTGACCTGCAT
CTGCTCCGCGGCGTTGCTCAGCTGGCTTTTCACCGGCGCAACCTGCAAGCAGCAAGCTTTGGGG
TTCAGAACAAGCTCCACACGTCGCTCCTTCCATTCAGAAACCAACAAGCTTAGTGCATGCATGG
ACCATCGGTACGCATACCTTGTTCGGGTTACTGAAGGAGTTCTCGTCCATGACGTTGCCAGACG
TGAGGACGGTGGCGGTTGATCCCAGCGCGTTGACGCTGGCCCCGAGTCCGCTCGTGGAGACCGT
GAGGTTAACGGTGTCCGACCCGAAGTTCACGACCTGCACAGCAGAAGCCACTTGAGAACGAAAC
ACCTTTAGCCGCGCAGGCTAGGACGGATGCGATGCGACAGACTCTACTACTTGCCTTCACTCTC
AGGAAGCTATTCTCTGCATCCTGCCACGTGATCGCAGACGCGGCCAGCGAACTCGAGTACCGGG
AACTGATATTAACCGGATGAATCATGGCGCCGCTTGACTCGCGGAAAATCGTCTGCATCCAGTA
GCTAGGAGTTCCATAGTGTTGCCAGGAGTTGAAGACAATAGCGTCCGGGTTCCACCTGATCTCG
TTTTGTTCGAAACAAAATCATCGCAGCGTTAGAGCAACGGGAAAAGAACAAGTAGAGGGTAAAA
AAAACCAAGAATACTAACGTTTGGTCATTGTCGTTCACGAAGAGTGGAGCGTAACTTGCCATCT
GAACGATATCACTGCAAAAAGGTCATCTAACTCACAGTAAAGACTATCCTTGGTAGTAGTAGAA
CCCCAAGCCCGCCAACGAAAATAAGGATCAGATCAACCAACTTGCAACCAAAAGGAGAGATCAC
CTGTTCTTCTCCAGACCAGTGAGGAAAGCAGCTTCAGCCAACGAAGCAAGAAGACTGCCTCTAC
CCGCGTCACTTCTCCAGACAGCGTACTCGCTCACAAAGGCCTGTGTTCGAATCATTTCAGCAAC
ATTTTTACTGTATGGACAGGGTACTGGTGATGTCATAAATAAGCAAGAAAATCACTGGAGTTTC
AGGGTCTTCAGAGAAACATGCAAATAGAACCACACGTCACATAAGCTCCTTATGAGTATTGCTC
ATCGTTATTCAGAATCACAACACCTCGGAGAATTGTACCCTCCATCTCTTAAGGATTTTGCAAA
GCATCAAAGGACCCATTTTTTATATACTACCCAAAGAACATCCCAACTCCCAAGTGAATGCCAG
GAATCCCTGATCGATGTAAATGACTGGTCGTGAAAGAGGGCAGTCTCATAAGAGTCCTTGTGAA
AATGAGACTTAGACTTACCTTAGGTCCACTACGTGATGTTCTGTCAAATGTGCTCCTCATGTTA
AACAAAGTCTTAGAATCAGTATAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.014234969
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b