Detail information of Os01g0532200_circ_g.3


General Information
CircRNA Name Os01g0532200_circ_g.3
ID in PlantcircBase osa_circ_002001
Alias Os01circ13858
Organism Oryza sativa
Position chr1: 19180698-19185277  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method SMALT, Segemehl
Parent gene Os01g0532200
Parent gene annotation FF domain domain containing protein. (Os01t0532200-01);Hypotheti
cal conserved gene. (Os01t0532200-02)
Parent gene strand -
Alternative splicing Os01g0532200_circ_g.4 Os01g0532200_circ_g.5 Os01g0532200_circ_g.6 Os01g0532200_circ_g.7 Os01g0532200_circ_g.8
Support reads 2
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0532200-01:9
Os01t0532200-02:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCAGATCTAAAAAAATACTAACTTGGAAAATCTCCAGTCGATCGATCTTTTCAAGTCGGGAA
CAGCGTTCATCATCCTCAAGACGTTCTTGAACTTTTattaccttttcttcctccctcaagcgct
ctttctcttttaacctttctttcaagtggacaacgcactcttcgaaaagctctctagagtatgt
ttcgctgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTACCTTTTCTTCCTCCCTCAAGCGCTCTTTCTCTTTTAACCTTTCTTTCAAGTGGACAACGC
ACTCTTCGAAAAGCTCTCTAGAGTATGTTTCGCTGTCCAATGCCCTAATGCAAAAAATAGTATA
AAATCATTCAAAACCCAGGTAAGACATAAATAACATAAAAGTATGACAGAAAACAGTCAAGCAA
ATTCAGTCATTCAAGGAACATGTATTTTGCAAAGGAAGCTCAGTTAAAATCTGATTCAGGCAAT
TCAGTAATTCACTGCCTTGCTTGCCATGTTTGTGAACAGATACAAAAACCATTATTTATAGAGA
ACTGATTTGCCATACTTACTGCATTGGACACAAATTTTTTTTATGTGTGAGCTATAAATTGTAT
TGAGTAACAATGTAACATACAGTTAGCACAAGAGAATCTAGGTCCTAAAATTCTGCAATATGAA
TTAAATTATATATAAAATGGATGTGCCACAGTACTCTGATTACAACATCTCAAGACTTCAACGC
AAACTTTTCTTCGACCCATCGTTACTATGGCCATTCATCACGACAAGGCGACCCAGCACTCTTT
ATGATCTAGGCAGAAGGGTGTACACAGGGTGCGAACGTACACAACAAAAGAAAGAAGAGAGCAA
GAAAATGAGAAAATATATGGGTCAACAATGCGTTCAGCAAGTCACCACATTAGCTTCGTACACT
TAAGTCAGCGGAAGAGCCTATTTAAAGCCCACCAATTCTTTTTCCTCAGCTGCCCTAGCATAGT
AGAGGTGCAATACGTACTCCTCCCTCTCCCATACAGAGTAGCCCCTCCTTCCCTCTTGTGCAAT
AAGCTATAATGTGGTTTGTGCAGATCCATGGCAGGATGGAAGCACCACCACGCAGGGTGAGTTT
CCACTCTCATTTCCCTCACTCCTTGCCCACAAGATGGAGCCACAAAAGTTCCTGGATCACGAGG
AATGGAGTCCATCTTTTGGAACGCCCTTGCCCACAAGATGGAGTCACAAAAGTTCCTGAATCAC
GAGGAATGGAGTCCATCTTTTGGAACGCTGGTTAAGAATGCGGGTCGAGAACAAATGTTTTTGG
GACGACATCCACGATGTACATTCGGAATGAGAGAAGATTGGAGAAGACAGAGCATGACAAGGCG
TGGAATCGACCAATGAACTCGAGCGATGCTCTGCTTGCACAAGAGGGCCAGACGTTCTCCTATC
ACTATCTCTTTATGTTGTGAACTAGGCCAAATGGGCTAGCGTGGCTCATTAACATGTTAACCAC
TTAATCATATCTGAGAACCTCTGTTCTCTTCTCCCACATAGCCCGCAGCTTGCGCCCTCCTTAG
CCACCAACATCAGTGCCCCCATTGCGCGACCACCTCTTGGGCGACAAGACAACGCAAGCCTCGG
CCAACGCTATCACCAGCCCCTCGTGCAAGTCGATTCGAGGGCATCGACTGCACCCCTGTCACCA
TCCATTTCTCTCTTCTCCACCTCTCCCTTCCCCTCTTCAGTTTGTTCCCCATCTAATGGCTGAG
GCAACGCCATGGAGACTTCATAGACCAAGCAGCGACCAATTGACGCCCCCATCCATTTCTCTCT
TGTCCACTCCCTTCCCCTCTTCAGTTTGTTCCCCATCTAATGGCTGAGGCAACGCCATGGAGAC
TTCATAGACCAAGCAGCGACCAATTGACGCCCGGGACGATGATCAGGCAACGACCCATCCACGA
TCTATGATGCGTCACGACGACGTGGAATGTGGGCTCGTCCCGCAGACCAGGTTTCTTAGGCCTT
GCCTTGTGGCTTCAGCGTCATCTAAACGACACCTTGAAATACATGGATCTACCAATTCTGATTG
CTTCCCCCCACAAAATTGCAAGATTGAACCCACGTATCCTATTTACCACCAGGTTGAACACAAG
TATCCTATTTACGGAACTAACTTCCTTCCAGCTGGCAAAGCCAGTACACCAACCAGTTTAGTAT
AACCAGGAGGCATGGTAAACATTTGTCACAATACAGTAATTTTCAGAGGATTGCCCTTACTTGT
ACTCTTGGCTATCTTCGAATAGTGCTTTAGAATCATCCCATGTTGAAGAAGCTGATATTTCCTG
CATTTTTTTCAAAGAAATATACATCAGTACAAAAAAGATCAATCTCAAAAGTGTAGTCTCGTGA
CTAGTCTAACTGACTCTATAGATAATACTGAACTATTTGCCCATGCTGTTGCACCTGGTGTAAA
GCAAAGTGCATTCATGAATGTAGGTTCCACATGCAACCATTTCTCCTAATGTCCTCCAATAAAG
CTTTAACAAAGTGCCAAATTCGTATGCCTTTACGATTTGAAATGAATGTCTATCCATGATTTAT
CAATATGCAACAAAAGTAAAACAAGATGGACTTCTTTATTTTGGCCAGTTTCTGTGACCACATT
GCACACAATTAGAACTATACTAGATAACCTTGCTGTCACCTTTAGACCAATTTTACTGTACATA
AAGTGGGTAACCCTAATTCAATTATCAATTCCTCAAACCATTGCAAGTCACAGCTATAGGAAAT
CATCAACAAAATTAGTTCTGACCTAAAAGCTTTCAAGAATCATATTTAGTGAGCCATAAAAGCT
CATGATTCATGCACTCCAACAACACCAGTAGTATTTATGGTTCCAACTCATCAACTATTTTTCT
ATGCAAAAACATAAATAATACCACATCTGTGAATTATAAAAGAATGTTACCAATAACTAACAAC
TTAGTTCAATGAGTACCAAAGTGCAGCCACTTTTCCATGATATCTTTCAACTACACACTTCGAA
TTTGATTACCAGTTACCAAATACAGTTCATTGCCATGCTACCAATCATCCATATAATTTTTAAA
AAGGAACTACATTGTAAATTGATTTTATCAGTACTATATATGCAACAAAAGTATAAATAAATGA
ATAAAATAGAAGGCATTTATGGATCATGTCGGCAGCCCAAAAGTCTTCCAGGCTGTTAAATAGT
TCTACACTGCTATGTTAACTTTGTCCTGAAAATTGCTGGACTTTGGATAAGCATAACAGGACAA
TTCAATGTAGGTAATCAGCAATCAATAGGCATGATGTACAACAAATTACAGAGTGTCATACCTT
GATTGAGTACAAAAGATCTGAGAAATTTTCACCCAGACGCTGGCGCTTCTTTGCTTCCTTTACC
TCCTTTTCCCTGAGCCTTTCAACTTGATCATCAAAAATAAGCTGCAGCAGATCCAGCAAAGATA
AGTAACAATATCGACAAAAATTCTTATCAGTCCTACAACTGAACATGGAAATTGTTACCGCAAG
AACAGCATCAATAATACACATATATTATCATCTTCATCAAACATAATCAAATTTTCAGGGTGAC
AAAACAATAATACCTTCATGTTTATGTTTGTTATTCCTTTCAAAGTATCATCCTCCGTAACAGC
AGTTTCGAAATCCTCTAGTGTCCATGAAGTCGTCATAGGAATCTAAACAAAATTACCTTGTCAG
CCAGATGGCAAACTAATTTCTACAGGTAAAACTTACCTATGGAGCAAGCTTGTAAAATAAAAGG
TACCTTTCCAGACTTCACTGCTTCTTTAATTCGGGCTTTGTCATCTTGATACTGAGATAAAAGG
ATGGTAGGTACATAAGTTCATGCATAACAAAAAATAACAGATATTCCAGAATTTAAATGGTGAT
TGTGATGAGATGAAAATATTGTAGACTCGTGCTTTTTTGTGACATGATGGAAATAAAATTTGTT
ATTGTGTTTTACAAAGCATGAGAATGGATAGAATTAACATCTTTCAGCAGGACCAAGATGTAGG
TTTTTGCCATAGTTGCTGGCCACCTCTATTCACTACAGATTTTACTTGCCATGATAATTGCAAT
TCCAAATTCAGGCATAGAGGCAACTATAGCACATTGATGACTTAATACATTGGATAAGCAAGAG
TATACTACGAATTTTAAAGGCCAACCTGTTTCTCAAGCTCCTCCATTACATCTTCAAACAGATC
TTTTGGCATTGAACCACTTATGTTCGAGGCCACAGCCAAGTACACAGAGGAATCTTTAACCTGT
AAATCGATAATTTTATGAATCAAGAAAAAAAATGTTGTCATTTTAATCGTATTTATAAAAGGTC
GATTTCAATGACCTGGGCACAGTAATCACGCCAACGAGTTTTTGCAGTAAGCATTCCTTCAGCT
ACATGTTCTTCCAACATCTTGCGAAATTCATCACGATTTTTGCGCTCTTGCCTCCTTACTTGTT
CCTGACAGAATTGACTTATATTAAACATCCATAGTGGTTCAAGACATCGAACAAAAAAAAAAGA
AGTGAACGTTATGTGACCAAAAAAACCTTATGTATCCGCTTGTGCTCTTCCTCTTCTTTCTCCA
GATCCCTTATATACTCCTGGATTGCACAGAAATGCATAGTTGAAGCACAAAATAAAGAAAGTCA
CTGCAGATCTAAAAAAATACTAACTTGGAAAATCTCCAGTCGATCGATCTTTTCAAGTCGGGAA
CAGCGTTCATCATCCTCAAGACGTTCTTGAACTTTT
Conservation Information
Conserved circRNAs NA
PMCS 0.093840455
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015