Detail information of BGIOSGA021990_circ_igg.1


General Information
CircRNA Name BGIOSGA021990_circ_igg.1
ID in PlantcircBase osi_circ_006503
Alias 6:2044431|2045632
Organism Oryza sativa ssp. indica
Position chr6: 2044431-2045632  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCGACCAAAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAGTCATCTCTTCCATT
TCGCCCTCTATCCATTTCTAAGTGATTACGTAGGCTctggttcattattattagatgtaccagc
attttggttcaagccagccaagtgatgcctagcattccccttccatgattcctcgaacccagct
agttcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGTTCATTATTATTAGATGTACCAGCATTTTGGTTCAAGCCAGCCAAGTGATGCCTAGCATT
CCCCTTCCATGATTCCTCGAACCCAGCTAGTTCATCTGTATCGCGTGCTTGTGTGAAAAATATA
TCCAAAATGCAATCACAATGAAGCACCCAAAGCTAAAAACAAACCTTCATGGAGATTGTGCAAT
ATCTGTGTAGTGTCCACATTGCCATCCGATTTCAGCTTCCTTGTTAGTGAATGTCCCTAAAATT
TCAAGTTCAAAGAAAATTAGTGACGGACCTAAACAAAACTATAATGAACTTAGCTTTAGATAAG
AGGAAATCTTTGATACTATTGTGCTGGTTCAATTAATGAGATTATAGTTTATACGATATATTTC
AACATGGCAAGGTATCTACCTTGTCATGAATTCCTCGAGAGATTCTATGAGTAGCCTCTTTAGT
CGTTGTATCAGCTTCCTTGCTTTCTTCCACAGTTATCTGCAGTAAACATAATTACTGTCACTTA
TGTGTACCAAACAGTGAGGAGTACATTAGTAGGTCTCTAGGATATTTGCTTACTCCATCACTTC
CTGTCCTTCGAGTTTTTGAAGCAGTGTAGTAAGCTCCATTGACACCACCATAAGTCACGGAAGA
GCTCTGATATGTGAATGTACGAGCTTGTGGCTGCCCTTCATTTGCCCTGTTGAAATCCCTCCGT
GGCTGGAGTTGGCCCCCTTGCATCTCTATAAATAAGAAAATAACAAAAACGACATAAACATACC
ATTGATACAGAATCCTAGATAAACTATAAAACAGAACTGATTCAAACCCAACTCCTACCATCAT
CTGGTTCTTGAACATACGGCTCACGATTTGCTTGGCGTTGCCTCCCTGAGTTCTCTCCTTCCTC
CTCATCAAGCTCAGTAATAATAAGCTTCCTGCCATTACCTCTGGGAGGAGCTTGCTCAAGGAAT
CCATCATTCCTTATGTCTCCAAATGGTCCTCCCATTGGCCCAAAAAGGCTAGGACCGTGCATCC
CGCTTCCAAATGGCTGATTAAAGAACGGATCATCGAAAGGATCCCTGCCTCCAAAGACACCAGA
GATCAAGCTCCTCTGGCGACCAAAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAG
TCATCTCTTCCATTTCGCCCTCTATCCATTTCTAAGTGATTACGTAGGCT
Conservation Information
Conserved circRNAs osa_circ_029566*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021