Plant Circular RNA Database

Detail information of Os06g0134900_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os06g0134900_circ_g.1
					
						ID in PlantcircBase
						osa_circ_029566
					
						Alias
						Os06circ02688
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 1878393-1879594  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl
					
						Parent gene
						
							Os06g0134900						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os06t0134900-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						4/1
					
						Tissues
						leaf/shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0134900-01:5

General Information
CircRNA Name	Os06g0134900_circ_g.1
ID in PlantcircBase	osa_circ_029566
Alias	Os06circ02688
Organism	Oryza sativa
Position	chr6: 1878393-1879594 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl
Parent gene	Os06g0134900
Parent gene annotation	Conserved hypothetical protein. (Os06t0134900-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	4/1
Tissues	leaf/shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0134900-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGCGACCAAAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAGTCATCTCTTCCATT
TCGCCCTCTATCCATTTCTAAGTGATTACGTAGGCTctggttcattattattagatgtaccagc
attttggttcaagccagccaagtgatgcctagcattccccttccatgattcctcgaacccagct
agttcatc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 796
Transcript exons: 1878393-1878491,1878565-1878640,1878796-1878876,1878958-
1879121,1879219-1879594
CTGGTTCATTATTATTAGATGTACCAGCATTTTGGTTCAAGCCAGCCAAGTGATGCCTAGCATT
CCCCTTCCATGATTCCTCGAACCCAGCTAGTTCATCTTCATGGAGATTGTGCAATATCTGTGTA
GTGTCCACATTGCCATCCGATTTCAGCTTCCTTGTTAGTGAATGTCCCTTGTCATGAATTCCTC
GAGAGATTCTATGAGTAGCCTCTTTAGTCGTTGTATCAGCTTCCTTGCTTTCTTCCACAGTTAT
TCCATCACTTCCTGTCCTTCGAGTTTTTGAAGCAGTGTAGTAAGCTCCATTGACACCACCATAA
GTCACGGAAGAGCTCTGATATGTGAATGTACGAGCTTGTGGCTGCCCTTCATTTGCCCTGTTGA
AATCCCTCCGTGGCTGGAGTTGGCCCCCTTGCATCTCATCATCTGGTTCTTGAACATACGGCTC
ACGATTTGCTTGGCGTTGCCTCCCTGAGTTCTCTCCTTCCTCCTCATCAAGCTCAGTAATAATA
AGCTTCCTGCCATTACCTCTGGGAGGAGCTTGCTCAAGGAATCCATCATTCCTTATGTCTCCAA
ATGGTCCTCCCATTGGCCCAAAAAGGCTAGGACCGTGCATCCCGCTTCCAAATGGCTGATTAAA
GAACGGATCATCGAAAGGATCCCTGCCTCCAAAGACACCAGAGATCAAGCTCCTCTGGCGACCA
AAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAGTCATCTCTTCCATTTCGCCCTC
TATCCATTTCTAAGTGATTACGTAGGCT
						
					

						Genomic sequence
						
							CTGGTTCATTATTATTAGATGTACCAGCATTTTGGTTCAAGCCAGCCAAGTGATGCCTAGCATT
CCCCTTCCATGATTCCTCGAACCCAGCTAGTTCATCTGTATCGCGTGCTTGTGTGAAAAATATA
TCCAAAATGCAATCACAATGAAGCACCCAAAGCTAAAAACAAACCTTCATGGAGATTGTGCAAT
ATCTGTGTAGTGTCCACATTGCCATCCGATTTCAGCTTCCTTGTTAGTGAATGTCCCTAAAATT
TCAAGTTCAAAGAAAATTAGTGACGGACCTAAACAAAACTATAATGAACTTAGCTTTAGATAAG
AGGAAATCTTTGATACTATTGTGCTGGTTCAATTAATGAGATTATAGTTTATACGATATATTTC
AACATGGCAAGGTATCTACCTTGTCATGAATTCCTCGAGAGATTCTATGAGTAGCCTCTTTAGT
CGTTGTATCAGCTTCCTTGCTTTCTTCCACAGTTATCTGCAGTAAACATAATTACTGTCACTTA
TGTGTACCAAACAGTGAGGAGTACATTAGTAGGTCTCTAGGATATTTGCTTACTCCATCACTTC
CTGTCCTTCGAGTTTTTGAAGCAGTGTAGTAAGCTCCATTGACACCACCATAAGTCACGGAAGA
GCTCTGATATGTGAATGTACGAGCTTGTGGCTGCCCTTCATTTGCCCTGTTGAAATCCCTCCGT
GGCTGGAGTTGGCCCCCTTGCATCTCTATAAATAAGAAAATAACAAAAACGACATAAACATACC
ATTGATACAGAATCCTAGATAAACTATAAAACAGAACTGATTCAAACCCAACTCCTACCATCAT
CTGGTTCTTGAACATACGGCTCACGATTTGCTTGGCGTTGCCTCCCTGAGTTCTCTCCTTCCTC
CTCATCAAGCTCAGTAATAATAAGCTTCCTGCCATTACCTCTGGGAGGAGCTTGCTCAAGGAAT
CCATCATTCCTTATGTCTCCAAATGGTCCTCCCATTGGCCCAAAAAGGCTAGGACCGTGCATCC
CGCTTCCAAATGGCTGATTAAAGAACGGATCATCGAAAGGATCCCTGCCTCCAAAGACACCAGA
GATCAAGCTCCTCTGGCGACCAAAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAG
TCATCTCTTCCATTTCGCCCTCTATCCATTTCTAAGTGATTACGTAGGCT
						
					

			
		

Sequences
Splice junction sequence	GGCGACCAAAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAGTCATCTCTTCCATT TCGCCCTCTATCCATTTCTAAGTGATTACGTAGGCTctggttcattattattagatgtaccagc attttggttcaagccagccaagtgatgcctagcattccccttccatgattcctcgaacccagct agttcatc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 796 Transcript exons: 1878393-1878491,1878565-1878640,1878796-1878876,1878958- 1879121,1879219-1879594 CTGGTTCATTATTATTAGATGTACCAGCATTTTGGTTCAAGCCAGCCAAGTGATGCCTAGCATT CCCCTTCCATGATTCCTCGAACCCAGCTAGTTCATCTTCATGGAGATTGTGCAATATCTGTGTA GTGTCCACATTGCCATCCGATTTCAGCTTCCTTGTTAGTGAATGTCCCTTGTCATGAATTCCTC GAGAGATTCTATGAGTAGCCTCTTTAGTCGTTGTATCAGCTTCCTTGCTTTCTTCCACAGTTAT TCCATCACTTCCTGTCCTTCGAGTTTTTGAAGCAGTGTAGTAAGCTCCATTGACACCACCATAA GTCACGGAAGAGCTCTGATATGTGAATGTACGAGCTTGTGGCTGCCCTTCATTTGCCCTGTTGA AATCCCTCCGTGGCTGGAGTTGGCCCCCTTGCATCTCATCATCTGGTTCTTGAACATACGGCTC ACGATTTGCTTGGCGTTGCCTCCCTGAGTTCTCTCCTTCCTCCTCATCAAGCTCAGTAATAATA AGCTTCCTGCCATTACCTCTGGGAGGAGCTTGCTCAAGGAATCCATCATTCCTTATGTCTCCAA ATGGTCCTCCCATTGGCCCAAAAAGGCTAGGACCGTGCATCCCGCTTCCAAATGGCTGATTAAA GAACGGATCATCGAAAGGATCCCTGCCTCCAAAGACACCAGAGATCAAGCTCCTCTGGCGACCA AAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAGTCATCTCTTCCATTTCGCCCTC TATCCATTTCTAAGTGATTACGTAGGCT
Genomic sequence	CTGGTTCATTATTATTAGATGTACCAGCATTTTGGTTCAAGCCAGCCAAGTGATGCCTAGCATT CCCCTTCCATGATTCCTCGAACCCAGCTAGTTCATCTGTATCGCGTGCTTGTGTGAAAAATATA TCCAAAATGCAATCACAATGAAGCACCCAAAGCTAAAAACAAACCTTCATGGAGATTGTGCAAT ATCTGTGTAGTGTCCACATTGCCATCCGATTTCAGCTTCCTTGTTAGTGAATGTCCCTAAAATT TCAAGTTCAAAGAAAATTAGTGACGGACCTAAACAAAACTATAATGAACTTAGCTTTAGATAAG AGGAAATCTTTGATACTATTGTGCTGGTTCAATTAATGAGATTATAGTTTATACGATATATTTC AACATGGCAAGGTATCTACCTTGTCATGAATTCCTCGAGAGATTCTATGAGTAGCCTCTTTAGT CGTTGTATCAGCTTCCTTGCTTTCTTCCACAGTTATCTGCAGTAAACATAATTACTGTCACTTA TGTGTACCAAACAGTGAGGAGTACATTAGTAGGTCTCTAGGATATTTGCTTACTCCATCACTTC CTGTCCTTCGAGTTTTTGAAGCAGTGTAGTAAGCTCCATTGACACCACCATAAGTCACGGAAGA GCTCTGATATGTGAATGTACGAGCTTGTGGCTGCCCTTCATTTGCCCTGTTGAAATCCCTCCGT GGCTGGAGTTGGCCCCCTTGCATCTCTATAAATAAGAAAATAACAAAAACGACATAAACATACC ATTGATACAGAATCCTAGATAAACTATAAAACAGAACTGATTCAAACCCAACTCCTACCATCAT CTGGTTCTTGAACATACGGCTCACGATTTGCTTGGCGTTGCCTCCCTGAGTTCTCTCCTTCCTC CTCATCAAGCTCAGTAATAATAAGCTTCCTGCCATTACCTCTGGGAGGAGCTTGCTCAAGGAAT CCATCATTCCTTATGTCTCCAAATGGTCCTCCCATTGGCCCAAAAAGGCTAGGACCGTGCATCC CGCTTCCAAATGGCTGATTAAAGAACGGATCATCGAAAGGATCCCTGCCTCCAAAGACACCAGA GATCAAGCTCCTCTGGCGACCAAAGCCACCGAATCCGGCAAACGGGTCCCTCCCACCAAAGAAG TCATCTCTTCCATTTCGCCCTCTATCCATTTCTAAGTGATTACGTAGGCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006503* 						
					
						PMCS
						0.497800627

Conservation Information
Conserved circRNAs	osi_circ_006503*
PMCS	0.497800627

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1879575-1879586(-)
1878424-1879586(-)
						
						Potential amino acid sequence
						
							MDRGRNGRDDFFGGRDPFAGFGGFGRQRSLISGVFGGRDPFDDPFFNQPFGSGMHGPSLFGPMG
GPFGDIRNDGFLEQAPPRGNGRKLIITELDEEEGENSGRQRQANREPYVQEPDDEMQGGQLQPR
RDFNRANEGQPQARTFTYQSSSVTYGGVNGAYYTASKTRRTGSDGITVEESKEADTTTKEATHR
ISRGIHDKGHSLTRKLKSDGNVDTTQILHNLHEDELAGFEESWKGNARHHLAGLNQNAGTSNNN
EPEPT*(-)
MLVHLIIMNQSLRNHLEMDRGRNGRDDFFGGRDPFAGFGGFGRQRSLISGVFGGRDPFDDPFFN
QPFGSGMHGPSLFGPMGGPFGDIRNDGFLEQAPPRGNGRKLIITELDEEEGENSGRQRQANREP
YVQEPDDEMQGGQLQPRRDFNRANEGQPQARTFTYQSSSVTYGGVNGAYYTASKTRRTGSDGIT
VEESKEADTTTKEATHRISRGIHDKGHSLTRKLKSDGNVDTTQILHNLHEDELAGFEESWKGNA
RHHLAGLNQNAGTSNNNEPEPT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1879575-1879586(-) 1878424-1879586(-)
Potential amino acid sequence	MDRGRNGRDDFFGGRDPFAGFGGFGRQRSLISGVFGGRDPFDDPFFNQPFGSGMHGPSLFGPMG GPFGDIRNDGFLEQAPPRGNGRKLIITELDEEEGENSGRQRQANREPYVQEPDDEMQGGQLQPR RDFNRANEGQPQARTFTYQSSSVTYGGVNGAYYTASKTRRTGSDGITVEESKEADTTTKEATHR ISRGIHDKGHSLTRKLKSDGNVDTTQILHNLHEDELAGFEESWKGNARHHLAGLNQNAGTSNNN EPEPT(-) MLVHLIIMNQSLRNHLEMDRGRNGRDDFFGGRDPFAGFGGFGRQRSLISGVFGGRDPFDDPFFN QPFGSGMHGPSLFGPMGGPFGDIRNDGFLEQAPPRGNGRKLIITELDEEEGENSGRQRQANREP YVQEPDDEMQGGQLQPRRDFNRANEGQPQARTFTYQSSSVTYGGVNGAYYTASKTRRTGSDGIT VEESKEADTTTKEATHRISRGIHDKGHSLTRKLKSDGNVDTTQILHNLHEDELAGFEESWKGNA RHHLAGLNQNAGTSNNNEPEPT(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0134900_circ_g.1

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