Detail information of Os01g0513100_circ_igg.1


General Information
CircRNA Name Os01g0513100_circ_igg.1
ID in PlantcircBase osa_circ_001910
Alias NA
Organism Oryza sativa
Position chr1: 18092594-18094562  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0513100_circ_g.1 Os01g0513100_circ_ig.1 Os01g0513100_circ_ig.2 Os01g0513100_circ_ig.3 Os01g0513100_circ_ig.4
Support reads 1
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCCTGGAGAGTCCTCTTGGCATTGCGCTAAGGACATGATTGAGCAGATTGTCCCTGGTGTA
TATTGCGGCGGCATTACCATTATGGCCATCAAGAACctctctgatagcattgctgaaccttctt
cgaataactcttccaccatacccgctgctgacagctgcttagtcagtttattaggatggtcttt
tgtctttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCTGATAGCATTGCTGAACCTTCTTCGAATAACTCTTCCACCATACCCGCTGCTGACAGCT
GCTTAGTCAGTTTATTAGGATGGTCTTTTGTCTTTTTTCTAAAGATTAAAGACTTCAACTTGTT
TATCTTTTTTGGTGGAGATGGATGACGTATTGTTTGATCAGGTGGGATCATGTCAACAACGATG
CAGGTCGTATCATCTTTTAGCCCTCTTGTCCTGAGCGCCTCCTAAAAAATTAGGGAAACAACTC
ATTTATAAGGAAACATGTCTGATGATGCAACATTAGTAATTTGGTACCCATTCGAGGCACAATA
ACTAGTTTTACAGCAGGATTGCTAAGAATTTAGAGAACACTAGATAGTTTCTTACCTTAACAAC
TTGCTTAGCAGCAAGCTCAGCAGGCAAACCTCTGCAACACTTTGCAGCTGCCTCTGATGACAAG
GCATCCCAAATGCCATCTGATGCAATAATAAGCCTCCCTCCAGCATTCGACAACTACGGAAAAT
AACAATAAATTAATAAAGAAGGCAGTTAGCTATCTTCCACCAATAACATAGGACATCGAGCAGG
AACATGTGTTCTTGTCTCTTTGTTGTTGGGCTGTCAAAAATATATTATTGCCAAACAGAAACCT
AGGAGGAATTCCAGGCGTCTATTTGCAAAGTGTCAAAGTTTTACCTTCACTTGCTTGACATAGG
GAACAGGAACTATAAATTCTCCAACATCGATATCTCCAATGGATCTTGATAGACATAAACCTCC
TGGCCAGCATCTCAGTGGACCAATCTGATAAAAGGGTGATACAGCTTGTTAGCATTGTTTTGTA
ATCCTTCCAAAACTAAGCACATGTATCCAATGGAGCTATCTTACATAGCATAGCAAGCTATGTT
TGCAACCATATCGTTGTAAGTTGTAACAGAAAGGCAGTGAAACACACCTCTGCCCCACCAACAA
CACTAAGCCTTCCAACTTCACCTCCACTCGCAGTGACACGTTCCCTCCTACAATCATTTTATAT
AGAAGGTTGGTTAAAGCTTACAAGTTACTTTTCTATTCAGCAGTCAACCAAAAAAAAAAAACAT
GCTATTGCTCAGGGACAAAGGAACTTAACAGAAAAATATAAAACAACAAATCACTTGGAGTTGT
GTAAGACTACGAGTCTAAATGAAAATCAAGAATACAGCAAATGGACACATTTTCACTCCATACC
GTTTAATTGTTGATCTGAGGAACTATTTTAGTAGTAAGTACAACTCCAGTAATTGTAGTAGCAT
GGTCCACTTAATTTGTGTGCAAATAGAAACAGGATATCATTTTTTTTATTGAAGGGAGAAGTAG
CAGTTGCATGAAGACATATGAACATTCTAAATAGAAATTGAATAGAACAATACAAATAACTAAT
TAGATAATATATGGAAAACAGTCATGCAAGATATTCTAGTTAACCCTTTCATATTCCATTTGCA
AAGCAAAGAATATGCAATGCATGCTGACTTGCAGAGCCTCTAAATAAAATACCATATTAATGGT
AAGCGACAGATACTCACTCCTCCACATTTTCTTCTAGTCTGTGATCCACAGTAAGCAAAGAAAC
AGCGCCACCCTGAGCATCCAAAATACACCGGGAATCACCAACGGAAGCAACGGTGATAGTCCAT
CCGTCAATGATCACGAATGTGGCAGTTGTGCCAGATGTTTGGCCTGGTGCATAGCCAAAAAGGA
AAATTGCCTCAACGTTTGGCATAACTTATACATAGAGGTAAATCCCAAACACCAAATACAGGAT
CATGCCTTTGTGTTGGAATTCTTTGTCAGTCTTAACAAACCCTGCGACAAGCGCACGTGGGAGC
GCATGCAACCACTCCTCCCTGGAGAGTCCTCTTGGCATTGCGCTAAGGACATGATTGAGCAGAT
TGTCCCTGGTGTATATTGCGGCGGCATTACCATTATGGCCATCAAGAAC
Conservation Information
Conserved circRNAs osi_circ_009634
PMCS 0.256400982
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017