Detail information of BGIOSGA001540_circ_g.1


General Information
CircRNA Name BGIOSGA001540_circ_g.1
ID in PlantcircBase osi_circ_009634
Alias Chr01:19109869_19111837(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 20079331-20081299  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA001540
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001540_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-GA
Number of exons covered BGIOSGA001540-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCCTGGAGAGTCCTCTTGGCATTGCGCTAAGGACATGATTGAGCAGATTGTCCCTGGTGTA
TATTGCGGCGGCATTACCATTATGGCCATCAAGAACcctctctgatagcattgctgaaccttct
tcgaataactcttccaccatacccgctgctgacagctgcttagtcagtttattaggatggtctt
ttgtcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTCTGATAGCATTGCTGAACCTTCTTCGAATAACTCTTCCACCATACCCGCTGCTGACAGC
TGCTTAGTCAGTTTATTAGGATGGTCTTTTGTCTTTTTTCTAAAGATTAAAGACTTCAACTTGT
TTATCTTTTTTGGTGGAGATGGATGACGTATTGTTTGATCAGGTGGGATCATGTCAACAACGAT
GCAGGTCGTATCATCTTTTAGCCCTCTTGTCCTGAGCGCCTCCTAAAAAATTAGGGAAACAACT
CATTTATAAGGAAACATGTCTGATGATGCAACATTAGTAATTTGGTACCCATTCGAGGCACAAT
AACTAGTTTTACAGCAGGATTGCTAAGAATTTAGAGAACACTAGATAGTTTCTTACCTTAACAA
CTTGCTTAGCAGCAAGCTCAGCAGGCAAACCTCTGCAACACTTTGCAGCTGCCTCTGATGACAA
GGCATCCCAAATGCCATCTGATGCAATAATAAGCCTCCCTCCAGCATTCGACAACTACGGAAAA
TAACAATAAATTAATAAAGAAGGCAGTTAGCTATCTTCCACCAATAACATAGGACATCGAGCAG
GAACATTTGTTCTTGTCTCTTTGTTGTTGGGCTGTCAAAAATATATTATTGCCAAACAGAAACC
TAGGAGGAATTCCAGGCGTCTATTTGCAAAGTGTCAAAGTTTTACCTTCACTTGCTTGACATAG
GGAACAGGAACTATAAATTCTCCAACATCGATATCTCCAATGGATCTTGATAGACATAAACCTC
CTGGCCAGCATCTCAGTGGACCAATCTGATAAAAGGGTGATACAGCTTGTTAGCATTGTTTTGT
AATCCTTCCAAAACTAAGCACATGTATCCAATGGAGCTATCTTACATAGCATAGCAAGCTATGT
TTGCAACCATATCGTTGTAAGTTGTAACAGAAAGGCAGTGAAACACACCTCTGCCCCACCAACA
ACACTAAGCCTTCCAACTTCACCTCCACTCGCAGTGACACGTTCCCTCCTACAATCATTTTATA
TAGAAGGTTGGTTAAAGCTTACAAGTTACTTTTCTATTCAGAAGTCAACCAAAAAAAAAACATG
CTATTGCTCAGGGACAAAGGAAATTAACAGAAAAATATAAAACAACAAATCACTTGGAGTTGTG
TAAGACTACGAGTCTAAATGAAATTCAAGAATACAGCAAATGGACACATTTTCACTCCATACCG
TTTAATTGTTGATCTGAGGAACTATTTTAGTAGTAAGTACAACTCCAGTAATTGTAGTAGCATG
GTCCACTTAATTTGTGTGCAAATAGAAACAGGATATCATTTTTTTTTATTGAAGGGAGAAGTAG
CAGTTGCATGAAGACATATGAACATTCTAAATAGAAATTGAATAGAACAATACAAATAACTAAT
TAGATAATATATGGAAAACAGTCATGCAAGATATTCTAGTTAACCCTTTCATATTCCATTTGCA
AAGCAAAGAATATGCAATGCATGCTGACTTGCAGAGCCTCTAAATAAAATACCATATTAATGGT
AAGCGACAGATACTCACTCCTCCACATTTTCTTCTAGTCTGTGATCCACAGTAAGCAAAGAAAC
AGCGCCACCCTGAGCATCCAAAATACACCGGGAATCACCAACTGAAGCAACGGTGATAGTCCAT
CCGTCAATGATCACGAATGTGGCAGTTGTGCCAGATGTTTGGCCTGGTGCATAGCCAAAAAGGA
AAATTGCCTCAACGTTTGGCATAACTTATACATAGAGGTAAATCCCAAACACCAAATACAGGAT
CATGCCTTTGTGTTGGAATTCTTTGTCAGTCTTAACAAACCCTGCGACAAGCGCACGGGGGAGC
GCATGCAACCACTCCTCCCTGGAGAGTCCTCTTGGCATTGCGCTAAGGACATGATTGAGCAGAT
TGTCCCTGGTGTATATTGCGGCGGCATTACCATTATGGCCATCAAGAAC
Conservation Information
Conserved circRNAs osa_circ_001910
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021