Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Solyc06g071820.2_circ_g.1 |
ID in PlantcircBase | sly_circ_002052 |
Alias | NA |
Organism | Solanum lycopersicum |
Position | chr6: 44240777-44241611 JBrowse» |
Reference genome | SL2.50.38 |
Type | e-circRNA |
Identification method | CIRI; find_circ |
Parent gene | Solyc06g071820.2 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Solyc06g071820.2_circ_g.2 Solyc06g071820.2_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Solyc06g071820.2.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.713296247 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
44241576-44240826(+) 44241597-44240779(-) |
Potential amino acid sequence |
MDPMSLHLLFSAPAKGNLAIVWLVTNGCV*(+) MKRHGIHLLALSHVYLVPQLKQRCTKGLAERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNF KKVEETEGWKFLQHHDPWLELEILQFMDEAELRKKRTRRHKLERSLYLQLSEAMDCLEHICTEG CTSVGPLDKEPSIKRQPCSKFDTCQGLQFLIRHFATCKRRTNGGCLRCKRMWQILRLHASICDQ PNDCQVPLCRCTEEQMKRHGIHLLALSHVYLVPQLKQRCTKGLAERLTIENAVDLLQLARLCDA PDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWLELEILQFMDEAELRKKRTRRHKLERSLYLQ LSEAMDCLEHICTEGCTSVGPLDKEPSIKRQPCSKFDTCQGLQFLIRHFATCKRRTNGGCLRCK RMWQILRLHASICDQPNDCQVPLCRCTEEQMKRHGIHLLALSHVYLVPQLKQRCTKGLAERLTI ENAVDLLQLARLCDAPDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWLELEILQFMDEAELRK KRTRRHKLERSLYLQLSEAMDCLEHICTEGCTSVGPLDKEPSIKRQPCSKFDTCQGLQFLIRHF ATCKRRTNGGCLRCKRMWQILRLHASICDQPNDCQVPLCRCTEEQMKRHGIHLLALSHVYLVPQ LKQRCTKGLAERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWL ELEILQFMDEAELRKKRTRRHKLERSLYLQLSEAMDCLEHICTEGCTSVGPLDKEPSIKRQPCS KFDTCQGLQFLIRHFATCKRRTNGGCLRCKRMWQILRLHASICDQPNDCQVPLC(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Yang et al., 2020 |