Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Solyc06g071820.2_circ_g.3 |
ID in PlantcircBase | sly_circ_002054 |
Alias | NA |
Organism | Solanum lycopersicum |
Position | chr6: 44241308-44242443 JBrowse» |
Reference genome | SL2.50.38 |
Type | e-circRNA |
Identification method | CIRI |
Parent gene | Solyc06g071820.2 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Solyc06g071820.2_circ_g.1 Solyc06g071820.2_circ_g.2 |
Support reads | 4 |
Tissues | fruit |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Solyc06g071820.2.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.528297982 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
44242416-44241359(+) 44241597-44241310(-) 44241362-44242412(-) |
Potential amino acid sequence |
MFSRTVEAAANSASSMNCRISSSSQGS*(+) MKRHGIHLLALSHVYLVPQLKQRCTKGLAERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNF KKVEETEGWKFLQHHDPWLELEILQFMDEAELAAASTVLENILARPGKRRSSERTIRILGVPCD AVSVFIRFLYSFKCTEEQMKRHGIHLLALSHVYLVPQLKQRCTKGLAERLTIENAVDLLQLARL CDAPDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWLELEILQFMDEAELAAASTVLENILARP GKRRSSERTIRILGVPCDAVSVFIRFLYSFKCTEEQMKRHGIHLLALSHVYLVPQLKQRCTKGL AERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWLELEILQFMD EAELAAASTVLENILARPGKRRSSERTIRILGVPCDAVSVFIRFLYSFKCTEEQMKRHGIHLLA LSHVYLVPQLKQRCTKGLAERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNFKKVEETEGWK FLQHHDPWLELEILQFMDEAEL(-) MIPGLNLKFYSSWMRLSWLLLRRFWRTY*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Zuo et al., 2016 |