Detail information of BGIOSGA022902_circ_igg.2


General Information
CircRNA Name BGIOSGA022902_circ_igg.2
ID in PlantcircBase osi_circ_016178
Alias Chr06:15046003_15050593(MH63RS2), Chr06:15077514_15082106(ZS97RS2), Chr06:15046003_15050593(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 16369544-16374136  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA022902_circ_igg.1 BGIOSGA022902_circ_igg.3 BGIOSGA022902_circ_igg.4 BGIOSGA022902_circ_igg.5 BGIOSGA022902_circ_ig.1 BGIOSGA022902_circ_ig.2 BGIOSGA022902_circ_ig.3 BGIOSGA022902_circ_ig.4 BGIOSGA022902_circ_ig.5 BGIOSGA022902_circ_ig.6 BGIOSGA021264_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGTAATCTTGGGTGACAAAGACTCCATTAGTACTTGGTTGAACGGTGCATCTGTGAAACTCG
AAGAAATTACAGTACCCTATGAAGGAGCAGATCTTGttcaatgcacggtcagagtctataaagg
aaaaggcttcctttcggcgacttatcccaaataataggtgtcttgtggcagtagaagggtatgc
acaaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCAATGCACGGTCAGAGTCTATAAAGGAAAAGGCTTCCTTTCGGCGACTTATCCCAAATAATA
GGTGTCTTGTGGCAGTAGAAGGGTATGCACAAAATAGTTGTCTCCTTTTATTTGGAACTTCCAA
CTATCATATGCTTTGTTAAAGTTTTGCATGAGCATGCTCTGATTTACCCCTTGAAGTTGGTACA
GTATGCATGTACTTGCTCAATATTTGCTTGCATTGATAGAGGCTAAAAGGCTACAGAATGATTT
GCACCTGGATGTAAAATTTGACATCTGGATTTATAGTAGTTTGATATAACTTCTGTCCTGCTCT
TCTTGCTTTCCGTGTCTCGCTCCATCCTTCTGTCATATAGTGGTGCTAATCGATGAGTGACATG
CCAATTGTAGGATTTGACATAGGACTGTAGGTTTAGATGTGCTTGATTTTCCTCATTCCAAACT
ATGAGGTATCTTAATTATATTTATTGAATATAAATCGTGGGGGCATAGATTGCATGACATGTTA
AATACATTGTACCGAATCTGGGGGTTACCTGTTTTTCATCTCAGGAATTGAGATAACTAGTTAT
TTTGATTGAGCAAATCTATAGGGAAACCACTAATTGTTGCTTGTGATCTATTCTAGTAAAACCT
TTGGCCAAAGGTGAATCACCAAGTACTCAATTATACACCTTCACTGAGAGCATGAGACAACTCG
CGAATATATCAAGACTCCCAAAATTATCATCATAGATTGGCTCCAAAAGCCTTTGCTCTGAGTA
CATTTGTTGGTCTTATATGTATACAGCTAGAATCATATCAAAGACGTATAACACTGCTAAATAA
GCTGTTCTATTTGGATTACTGGTTATGTGAAAAGCACCTACAGTCCTAGGTGTCATGGCCATAC
GACATGCGGGCTGCTAGTAGGTCCTTTGGCCCAATGAAACACTGGAGCAGCAAGGCGTTGGATT
ATCTGATATCATTTGTTAGTTTAGTTGATTATTATTCCTAGTTAGCTTTTGTATCATATCATTA
CTCATTAGTTGGTTAGATCAGTAGGGCATTGGCATCATCATTGGGGATTAAGCAAAGAGTTAAA
AAATTACCTCTCTCCTTCATGTTGTCTCCTATTCTCCCTCCAAAGCCCTCTTCTGTATTCTTGC
TGTTCACATCTAATCTACTATTTCTTCAATCCCTAACCCAGCTACCCAAATGGGTGATCAAGGC
TACTGACAAAAGGTACAGAGGTTTTCTTTGGAAGGGTCAGGAGAGGGCTAATGGTGCTAATTTC
CTTGTTTCTTGGGATTGCGTTTGCTGACCTCTCCCTTATGGGGACTTGCATTCATAATCTGGAA
AAGATGGGATGGGCCTTACTCATGAGGTGGTTGTGGCTTCAAACACCTGACTCTTCTAGACCTT
GGGCTTGTTTTGGTTTTCCTATACAAGTACCTCACAATGTTCACTCTTTGTTTGGAGTGGCTGT
GAAAAACTATAATTGGTAAAAGGGGGAACACCATGCTCTGGCATGATAGATGGCTGCCAGGAAG
AACAATAGCTGAACTGGCCCCCAATCTTTTTGAATTAATCACTCAAAGGTCAAGTAAGCAGCGC
ACTGTGGTGCAGGCATTGGAGAACAAAAGGTGGGTGAGAAATATAAAAGGTGGCTTCACTGTTC
AAGTTCTCTGTTGATTTGGCACTTGGTTGAGGGGGCGGTCTTGCAGCAGGGGGTTCAGGACTAA
CACATTTGGAAGCTTACAGGGTCCTGCTCCTACACTAGCAAGTCAACCTACAATGCTTATTTCC
TGGGATCCATCAAGTTTGCTCCATGGAAGCGAATATGGACTAGTTGGGTTCCTTTATGCTGCAA
AATTTTCATTTGGTTGGCTATTAACAGCAGATGTTGGACTTCAGATCAACTTGCTTTTAATCAG
GGTCTACCACATCCTGCTGCCTGCCCTTTATATGACCAAAGCGGCGAAACTATTCACCATATCC
TTGTATCTCGTGTTTTCTCTGGCCATGTTTGGACTTTACTACTCTCTAAAGTTGGGGCTGGCTG
GTCCTGCACCTGAACTGTCGGCAGCCCATTTTCCAGGATGGTGGTGGCAAAGTTATCGGGATTA
TCCTAGCAGCTTGGGTGATTTGGAAGCACCGCAACGACTGTGTTTTCAGTGGTGCCACAACAAA
CGTTTTGGTGCTTTTAAAGACAGCAGAAAATGATAGTAGTAGCCTGTGCCTACATGTGTTTCTT
TGTAGGTCGTTTACCCCGGACGGCTAGTCCTTCCTTTTTCGTTTGTGGTCATGCATCACCTTTA
AGTGATGAGTATGTGAGGTGTGTTCTTAGTGGTGGATCAGTTTTGATCCCTCCTTTTGTATTTG
GTTTATTTTCTTAATGAAATGAAGTACAGTCCTGCGTTTCCGAGGAAAAACTCCAGCTACCCTT
CTTAATCCTCACATGTGACACTGGGGCTTGATTTTGCCCTGACCAATCTGAGTTGAACTGGTTA
AAATGGACAAAATTCAATCTAGGACTCAATTAGTTGTTAGTGTATCACATTCAAGTTGTTTTAT
CCTTGTGCAGCACAATTTGGTAGATAAAAAATATTTAGGTTCTTATTTGTAGCATAATGTCTTT
GTTGAAAAGTCCATTTAGAGAGACAATAAGCTGACCATATTTTTGTATTAATCATGCATTAATA
TTTTATATGAGCTCAGTTTCTACGAATGGAAAAAGGATGGGCCAAAGAAGATGCCGTATTACAT
TCATTTCCAAGATCAGAGGCCTCTTGTCTTTGCTGCCCTCTTTGACACTTGGACAAACTCGGAA
GGTTAGCATGCACATTTGTCAATTAACTTTCTAGTCTTTGGAAGCCATGATTATGGTACTAAGA
ATGTGTTTCAGTGTAACCACATTTTCTTAAAGTAGTCTTGGGAGTTGCTGCAAAAGATATGTTG
TCCTGTTAATGCTGCAGCTTATTTATTCCAACATCTGTGGTTGTAATTACTAATTGGTCTTATT
TAGCTTCCTAAAAGGTTTTATCTGCATATATGACATTGTAAATGAAACAAGTTGTAGTATGATA
TATTTTTGTACTGGTTGAACGCCATGTTTGTAAAGATCTAACATGGTTGCTCAGTTTTGCTTTG
TGCCTGCTCTGTCTGCACATAGTTGTAAACATATTATATCCACATCCTGCTTTATATCTAGATC
ATGTCTTATCATAATCGGTGCGACAAGTTCACGTTGTCTTGTGATCAAAATTGCAAATATGGAT
GAACTGTGATAATGAACATTTGCAGGCATGTACTGAACTTGAAGTAGTGCTGTCATCAAGTGTT
TCACATGTTTTAAATCTAATTTATGCCATGCGCTGCGCTGCGCTGCGCATTAAATGCCTAACAT
TATTAATTACATAGAAGAACTGCATTCTGAATAGTACAATATGCATATCATTATGATAGGGAAA
AGCTTTCAGATACGAGTTCCACTGTACAATGTCCCAGAACTACATGTTTGGTGTTTGGCTTTTT
GATTGTAAAAATAATACGACGTTTTGCTCTACAAATATTGACAGATTTAGTATATAAATTGTCT
AGCATGCACTCACACTACCAACTCTTATCTGCTATCCTTTTGTCTACATTTTAAGGAAGCCATT
TTATTAATGCATTTTTTATTGAGCTGAATTATTGATGCATATTTCAAAACACTTTCTGCTGTTC
ACATACGTCAGTTTATCACATGTTCGGATTAATTGATTATGCCACTTTAGACTTTTGTTGCTCC
AATCGGTAAAATGATAATTTACTTGTTTGAGTATTAATATTATCTGCTATTTCCCCAGGAGAAA
CCATCCATACTTTTACTATTTTGACCACTCGGGCCTCGATTTCTCTAAAATGGCTTCATGGTTA
GCTAGATACTCTCTACCCCCCATGATCTCAGATTATTCATATATTTACTATTTCGATACATGTG
TGATAAGGCTGCTTTTGAATTGGCTTCATGGTTAGTAGGGTTAATAACAAAACCCTGTTATTTT
ACACTATATCAAGCTGACATTTATTTGTACATACCTACTCTGGAACATCTTCGTAGCTAGTGAC
ATTACTGGAAGTTTGTAATATTTAGCTTGTTAATGCACTGTTCCTATTAATTTTCACTTTACAA
TATCTTATTTAGAGGCAGGCAAGGAGAAAGCCAGTTGATTTTCAATTAAAAGATAGTATATATC
ATTGATGATAGTACAATATTGCCTTTAACAGTACTGATGCATCTGTATTTTACTTTATATGATA
AGTTGTCCTTGTAGTTCAATTTAATTGAGAAAACAGATTATACCTTTTTCTGGTAATGGATGTA
TGAAAAATGTTTTTTCCAAGTCTATCAGGTCTTGATATACGAGTACTTATTATACTGTTGCACA
CAATGTTTTTATGACTTGCTACCTTTTGATTTGATTTGGCACCTTCTGAGTCTGCATGTGACTT
AACAGATAGAATGCCAGTAATCTTGGGTGACAAAGACTCCATTAGTACTTGGTTGAACGGTGCA
TCTGTGAAACTCGAAGAAATTACAGTACCCTATGAAGGAGCAGATCTTG
Conservation Information
Conserved circRNAs osa_circ_030820
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021