Detail information of Os06g0470800_circ_g.2


General Information
CircRNA Name Os06g0470800_circ_g.2
ID in PlantcircBase osa_circ_030820
Alias Os_ciR10361
Organism Oryza sativa
Position chr6: 15653515-15658100  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os06g0470800
Parent gene annotation Protein of unknown function DUF159 family protein. (Os06t0470800
-01)
Parent gene strand +
Alternative splicing Os06g0470800_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os06t0470800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCAGTAATCTTGGGTGACAAAGACTCCATTAGTACTTGGTTGAACGGTGCATCTGTGAAACTC
GAAGAAATTACAGTACCCTATGAAGGAGCAGATCTTttcaatgcacggtcagagtctataaagg
aaaaggcttcctttcggcgacttatcccaaataataggtgtcttgtggcagtagaagggtatgc
acaaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCAATGCACGGTCAGAGTCTATAAAGGAAAAGGCTTCCTTTCGGCGACTTATCCCAAATAATA
GGTGTCTTGTGGCAGTAGAAGGGTATGCACAAAATAGTTGTCTCCTTTTATTTGGAACTTCCAA
CTATCATATGCTTTGTTAAAGTTTTGCATGAGCATGCTCTGATTTACCCCTTGAAGTTGGTACA
GTATGCATGTACTTGCTCAATATTTGCTTGCATTGATAGAGGCTAAAAGGCTACAGAATGATTT
GCACCTGGATGTAAAATTTGACATCTGGATTTATAGTAGTTTGATATAACTTCTGTCCTGCTCT
TCTTGCTTTCCGTGTCTCGCTCCATCCTTCTGTCATATAGTGGTGCTAATCGATGAGTGACATG
CCAATTGTAGGATTTGACATAGGACTGTAGGTTTAGATGTGCTTGATTTTCCTCATTCCAAACT
ATGAGGTATCTTAATTATATTTATTGAATATAAATCATGGGGGCATAGATTGCATGACATGTTA
AATACATTGTACCGAATCTGGGGGTTACCTGTTTTTCATCTCAGGAATTGAGATAACTAGTTAT
TTTGATTGAGCAAATCTATAGGGAAACCACTAATTGTTGCTTGTGATCTATTCTAGTAAAACCT
TTGGCCAAAGGTGAATCACCAAGTACTCAATTATACACCTTCACTGAGAGCATGAGACAACTCG
CGAATATATCAAGACTCCCAAAATTATCATCATAGATTGGCTCCAAAAGCCTTTGCTCTGAGTA
CATTTGTTGGTCTTATATGTATACAGCTAGAATCATATCAAAGACGTATAACACTGCTAAATAA
GCTGTTCTACTTGGATTACTGGTTATGTGAAAAGCACCTACAGTCCTAGGTGTCATGGCCATAC
GACATGCGGGCTGCTAGTAGGTCCTTTGGCCCAATGAAACACTGGAGCAGCAAGGCGTTGGATT
ATCTGATATCATTTGTTAGTTTAGTTGATTATTATTCCTAGTTAGCTTTTGTATCATATCATTA
CTCATTAGTTGGTTAGATCAGTAGGGCATTGGCATCATCATTGGGGATTAAGCAAAGAGTTAAA
AAATTACCTCTCTCCTTCATGTTGTCTCCTATTCTCCCTCCAAAGCCCTCTTCTGTATTCTTGC
TGTTCACATCTAATCTACTATTTCTTCAATCCCTAACCCAGCTACCCAAATGGGTGATCAAGGC
TACTGACAAAAGGTACAGAGGTTTTCTTTGGAAGGGTCAGGAGAGGGCTAATGGTGCTAATTTC
CTTGTTTCTTGGGATTGCGTTTGCTGACCTCTCCCTTATGGGGACTTGCATTCATAATCTGGAA
AAGATGGGATGGGCCTTACTCATGAGGTGGTTGTGGCTTCAAACACCTGACTCTTCTAGACCTT
GGGCTTGTTTTGGTTTTCCTATACAAGTACCTCACAATGTTCACTCTTTGTTTGGAGTGGCTGT
GAAAACTATAATTGGTAAAAGGGGGAACACCATGCTCTGGCATGATAGATGGCTGCCAGGAAGA
ACAATAGCTGAACTGGCCCCCAATCTTTTTGAATTAATCACTCAAAGGTCAAGTAAGCAGCGCA
CTGTGGTGCAGGCATTGGAGAACAAAAGGTGGGTGAGAAATATAAAAGGTGGCTTCACTGTTCA
AGTTCTCTGTTGATTTGGGACTTGGTTGAGGGGGCGGTCTTGCAGCAGGGGGTTCAGGACTAAC
ACATTTGGAAGCTTACAGGGTCCTGCTCCTACACTAGCAAGTCAACCTACAATGCTTATTTCCT
GGGATCCATCAAGTTTGCTCCATGGAAGCGAATATGGACTAGTTGGGTTCCTTTATGCTGCAAA
ATTTTCATTTGGTTGGCTATTAACAGCAGATGTTGGACTTCAGATCAACTTGCTTTTAATCAGG
GTCTACCACATCCTGCTGCCTGCCCTTTATATGATCAAAGCGGCGAAACTGTTCACCATATCCT
TGTATCTCGTGTTTTCTCTGGCCATGTTTGGACTTTACTACTCTCTAAAGTTGGGGCTGGCTGG
TCCTGCACCTGAACTGTCGGCAGCCCATTTTCCAGGATGGTGGTGGCAAAGTTATCGGGATTAT
CCTAGCAGCTTGGGTGATTTGGAAGCACGGCAACGACTGTGTTTTCAGTGGTGCCACAACAAAC
GTTTTGGTGCTTTTAAAGACAGCGGAAAATGATAGTAGTAGCCTGTGCCTACATGTGTTTCTTT
GTAGGTTGTTTACCCCGGATGGCTAGTCCTTCCTTTTTCGTTTGTGGTTATGCATCACCTTTAA
GTGATGAGTATGTGAGGTGTGTTCTTAGTGGTGGATCAGTTTTGATCCCTCCTTTTGTATTTGG
TTTATTTTCTTAATGAAATGAAGTACAGTCCTGCGTTTCCGAGGAAAAACTCCAGCTACCCTTC
TTAATCCTCACATGTGACACTGGGGCTTGATTTTGCCCTGACCAATCTGAGTTGAACTGGTTAA
AATAGACAAAATTCAATCTAGGACTCAATTAGTTGTTAGTGTATCACATTCAAGTTGTTTTATC
CTTGTGCAGCACAATTTGGTAGATAAAAAATATTTAGGTTCTTATTTGTAGCATAATGTCTTTG
TTGAAAAGTCCATTTAGAGAGACAATAAGCTGACCATATTTTTGTATTAATCATGCATTAATAT
TTTATATGAGCTCAGTTTCTACGAATGGAAAAAGGATGGGCCAAAGAAGATGCCGTATTACATT
CATTTCCAAGATCAGAGGCCTCTTGTCTTTGCTGCCCTCTTTGACACTTGGACAAACTCGGAAG
GTTAGCATGCACATTTGTCAATTAACTTTCTAGTCTTTGGAAGCCATGATTATGGTACTAAGAA
TGTGTTTCAGTGTAATCACATTTTCTTAAAGTAGTCTTGGGAGTTGCTGCAAAAGATATGTTGT
CCTGTTAATGCTGCAGCTTATTTATTCCAACATCTGTGGTTGTAATTACTAATTGGTCTTATTT
AGCTTCCTAAAAGGTTTTATCTGCATATATGACATTGTAAATGAAACAAGTTGTAGTATGATAT
ATTTTTGTACTGGTTTAACGCCATGTTTGTAAAGATCTAACATGGTTGCTCAGTTTTGCTTTGT
GCCTGCTCTGTCTGCACATAGTTGTAAACATATTATATCCACATCCTGCTTTATATCTAGATCA
TGTCTTATCATAAGCGGTGCGACAAGTTCATGTTGTCTTGTGATCAAAATTGCAAATATGGATG
AACTGTGATAATGAACATTTGCAGGCATGTACTGAACTTGAAGTAGTGCTGTCATCAAGTGTTT
CACATTTTTTAAATCTAATTTATGCCATGCGCTGCGCTGCGCTGCGCATTAAATGCCTAACATT
ATTAATTACATAGAAGAACTGCATTCTGAATAGTACAATATGCATATCATTATGATAGGGAAAA
GCTTTCAGATACGAGTTCCACTGTACAATGTCCCAGAACTACATGTTTGGTGTTTGGCTTTTTG
ATTGTAAAAATAATACGACGTTTTGCTCTACAAATATTGACAGATTTAGTATATAAATTGTCTA
GCATGCACTCACACTACCAACTCTTATCTGCTATCCTTTTGTCTACATTTTAAGGAACCATTTT
ATTAATGCATTTTTTATTGAGCTGAATTATTGATGCATATTTCAAAACACTTTCTGCTGTTCAC
ATACGTCAGTTTATCACATGTTCGGATTAATTGATTATGCCACTTTAGACTTTTGTTGCTCCAA
TCGGTAAAATGATAATTTACTTGTTTGAGTATTAATATTATCTGCTATTTCCCCAGGAGAAACC
ATCCATACTTTTACTATTTTGACTACTCGGGCCTCGATTTCTCTAAAATGGCTTCATGGTTAGC
TAGATACTCTCTACCCCCCATGATCTCAGATTATTCATATATTTACTATTTCGATACATGTGTG
ATAAGGCTGCTTTTGAATTGGCTTCATGGTTAGTAGGGTTAATAACAAAACCCTGTTATTTTAC
ACTATATCAAGCTGACATTTATTTGTACACACCTACTCTGGTCTTCGTAGCTAGTGACATTACT
GGAAGTTTGTAATGTTTAGCTTGTTAATGCACTGTTCCTATTAATTTTCACTTTACAATATCTT
ATTTAGAGGCAGGCAAGGAGAAAGCCAGTTGATTTTCAATTAAAAGATAGTATATATCATTGAT
GATAGTACAATATTGCCTTTAACAGTACTGATGCATCTGTATTTTACTTTATATGATAAGTTGT
CCTTGTAGTTCAATTTAATTGAGAAAACAGATTATACCTTTTTCTGGTAATGGATGTATGAAAA
ATGTTTTTGCCAAGTCTATCAGGTCTTGATATACGAGTACTTATTATACTGTTGCACACAATGT
TTTTATGACTTGCTACCTTTTGATTTGATTTGGCACCTTCTGAGTCTGCATGTGACTTAACAGA
TAGAATGCCAGTAATCTTGGGTGACAAAGACTCCATTAGTACTTGGTTGAACGGTGCATCTGTG
AAACTCGAAGAAATTACAGTACCCTATGAAGGAGCAGATCTT
Conservation Information
Conserved circRNAs osi_circ_006717* osi_circ_016178
PMCS 0.093880724
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015