Detail information of Os01g0846000_circ_g.1


General Information
CircRNA Name Os01g0846000_circ_g.1
ID in PlantcircBase osa_circ_004808
Alias NA
Organism Oryza sativa
Position chr1: 36326039-36328628  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os01g0846000
Parent gene annotation Nucleic acid-binding, OB-fold domain containing protein. (Os01t0
846000-01)
Parent gene strand -
Alternative splicing Os01g0846000_circ_g.2 Os01g0846000_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0846000-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCATTTGCTGTAGTGAACTGCGAGAAGCGCGTGACCCGCACTCGGACTTGCCAATGGTGTGA
TTCCTGTGTCACATTCCTTAGCATAGTGTAATCCATccttcctgagcaagatcctcatcaatta
cagaagatttatgttttttgtctggttgtgccatagccaggacctgataaagcattagtggtca
gttaggtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1649
Transcript exons: 36326039-36326108,36326190-36326244,36326335-36326765,36
326885-36327253,36327397-36327478,36327570-36327697,3632
7923-36328019,36328135-36328407,36328485-36328628
CCTTCCTGAGCAAGATCCTCATCAATTACAGAAGATTTATGTTTTTTGTCTGGTTGTGCCATAG
CCAGGACCTCTGAAGTAGGCGGTGTTGTCCCATGCTGATCATCACGGCTATCAGTTGTGGCCTT
TGGATCTGGAAGCACCAGTGGTGTAGAAGGTGTCATAGATTGGAGAGAAGAGCCAATTATCGTG
TGCGGTTCAATTGCATCAGCTGGTGATGAGCCATGTTGAGAAGATGCCACAGAAGCATCATGGC
TGGGCAGAGTACTTGTGTGGGCTGCATCTAGTGAGGCTAGCATAAGGGAATCCACTTGGTAAGA
TATCCGATTTCTTTGCAATGAGCCACGTGACACACTAGTTCTAATGACATATTGTTTTCCAAAA
ACTGCTTTGATTTCTGATGGAACTATATCTCGTGCTCCTTGGACAGATGCAACCAGGTTAAGAA
AAGGGATGCCAATCAACTGGTAGCCAATTTCTCCAAAGAAGGTAAACTCAGCTGTTTTGGCGTC
ATGGTTCGTCTAATGGGTCGACACCTATGATAGCCACTCTGTACCTTGTTTCAATTGCATTAGT
GATGCACCTCGAGCATTTATATGTGTTCCCTTCTCTACCTGCTCCTCTCTTACTGGTGTTGCAT
GCTATGTACCACCAGGCTTCAGCAGGGACTAAATCCTTGATGGCTATCTTGACAATATAGCTGT
TGCCCTAGTTCACATGCGAGAAACAGAGGAAGTAAAGGATGGCACTGATAACACATGGATGGAA
ATTATGCAATGTAATCATTAGATGTGGGGAGGTACACTATATTACCAAGGCTTCGTGGGGATTA
AGGTCACAGATATCAAAAACTTTTACATGCACAGCTTCTTTCTGACCAAAGTTCGGCTCTATTG
CCCTTACCACCTGTGGGTTACCATGGAGGCTGCTTATGAGAGAAATTGTTTCCTAGATTGGTGC
ATTGGGATACCACCTACAAACAGTGCTACCTTGTAGGGCTAGCTGGTCGTCTCGGAATTTAACA
GTTAATCCAACAAACAATATAACAACAGGTCCATGGTCTGGTTGCTGCTGTAAGTTTTCAGCGT
GGAACTGTGTAGCATGGGCACCCCACAATGCAACGACAGCAGTTTCGCTTCCATTGGTTATGTG
GACATTAAGCACCGCTTTCATAACACCTCCACAAGAAACAGTTTGCACTGGTCCAATGGCTGTC
ATTATACCTATAGCATCTGAAAGAATATCTTTCCTGTAAGCACGACCTCTGAGTTCATCAAAAG
AAAGAACCTTGTAAGCATGAGATGGGAATGTGGATGGTGCCTCAGTGTCTTCTCTAACGGTTGT
GTGGGCAGTGAATTTTGCCATGACCATCCGATCAATAGGCCTGTACTGGGGGCGCGCCTCAGCA
ACTTCGAAGTACTTGATGTAATACACAGCATCCTCCTTCAGCAAAGGCTTGAATTGAGAAACAT
GACGTCCTGGGATCTGCGCATCCATCATGTACCCTGCTCATCAAGCAGGACTAAATCAAGTCGC
AGAATCTTGTCAGGTTCATTTGCTGTAGTGAACTGCGAGAAGCGCGTGACCCGCACTCGGACTT
GCCAATGGTGTGATTCCTGTGTCACATTCCTTAGCATAGTGTAATCCAT

Genomic sequence CCTTCCTGAGCAAGATCCTCATCAATTACAGAAGATTTATGTTTTTTGTCTGGTTGTGCCATAG
CCAGGACCTGATAAAGCATTAGTGGTCAGTTAGGTTTGATAAGGGACAGACATACATATTTGCT
CTAAGTACAGAATATAGTGCTAGCCTCTGAAGTAGGCGGTGTTGTCCCATGCTGATCATCACGG
CTATCAGTTGTGGCCTATGCATAAGCAATATTAATATAAGAATTTACAATTGTTTATATGCAAG
AGAGTACACATTGCTGCAGAATGAAGCTATTAGATTATACCTTTGGATCTGGAAGCACCAGTGG
TGTAGAAGGTGTCATAGATTGGAGAGAAGAGCCAATTATCGTGTGCGGTTCAATTGCATCAGCT
GGTGATGAGCCATGTTGAGAAGATGCCACAGAAGCATCATGGCTGGGCAGAGTACTTGTGTGGG
CTGCATCTAGTGAGGCTAGCATAAGGGAATCCACTTGGTAAGATATCCGATTTCTTTGCAATGA
GCCACGTGACACACTAGTTCTAATGACATATTGTTTTCCAAAAACTGCTTTGATTTCTGATGGA
ACTATATCTCGTGCTCCTTGGACAGATGCAACCAGGTTAAGAAAAGGGATGCCAATCAACTGGT
AGCCAATTTCTCCAAAGAAGGTAAACTCAGCTGTTTTGGCGTCATGGTTCGTCTAATGGGTCGA
CACCTATGATAGCCACTCTGTACCTATTATAGAAGGTAGCAGAAGTAGGTCTTATGTTCTATAG
CTCAAATTGTAGCATACTGAATGGTTTATTATGTAAAATAATTGAGAAGAGCTGAACGTGTGTA
GGTGGTAAGAGTACCTTGTTTCAATTGCATTAGTGATGCACCTCGAGCATTTATATGTGTTCCC
TTCTCTACCTGCTCCTCTCTTACTGGTGTTGCATGCTATGTACCACCAGGCTTCAGCAGGGACT
AAATCCTTGATGGCTATCTTGACAATATAGCTGTTGCCCTAGTTCACATGCGAGAAACAGAGGA
AGTAAAGGATGGCACTGATAACACATGGATGGAAATTATGCAATGTAATCATTAGATGTGGGGA
GGTACACTATATTACCAAGGCTTCGTGGGGATTAAGGTCACAGATATCAAAAACTTTTACATGC
ACAGCTTCTTTCTGACCAAAGTTCGGCTCTATTGCCCTTACCACCTGTGGGTTACCATGGAGGC
TTCAAATATGAAACAGATTAGTGTTTTGGTCTGTAGGCTAGGGAAATATGGTTGATCCATATAA
CAGATAAACTAAGGAAGATATAAGTTGAACAAAGAAGAAGCATGTTTATGTGAATGGAAAGAGT
GCAGAAACAGATACCTGCTTATGAGAGAAATTGTTTCCTAGATTGGTGCATTGGGATACCACCT
ACAAACAGTGCTACCTTGTAGGGCTAGCTGGTCTGGCAAGCATGAAAGAGTACATTATTTAAGC
AAGAACAGGCAAATATGTAAATGGGAGAGGTGATAATAGGGTAAGAATTTATTTCTTACCGTCT
CGGAATTTAACAGTTAATCCAACAAACAATATAACAACAGGTCCATGGTCTGGTTGCTGCTGTA
AGTTTTCAGCGTGGAACTGTGTAGCATGGGCACCCCACAATGCAACGACAGCAGTTTCGCTGTA
GGCACATAGAAGAATGAAGAGGTGGAAAATAATGTGCATGAATTAAGCTAGTATTCACATTTGC
AAATAAGAGAGTTGTGAAACAATGTTGATATTATAAACAAAAAAGAAGGATTGTACATGTGTAA
AAAGAAACTGACAATGCATGTGCGGACAATTAAGTCATTTTGTATCTAATACAAAAGCAGCTGG
AACAATTAGCGGATTAACGCATACATACCTTCCATTGGTTATGTGGACATTAAGCACCGCTTTC
ATAACACCTCCACAAGAAACAGTTTGCACTGGTCCAATGGCTGTCATTATACCTATAGCATCTA
CAGGAGTAGTATAAGGGATAAAATTTGCACATGAGTAAGTGAGAGCAGTAAGCAGGGAATGGAC
AAAGCTAATAAGGAATGAGATAGATTGATCTGGACCAAACAGAGTCACCTGAAAGAATATCTTT
CCTGTAAGCACGACCTCTGAGTTCATCAAAAGAAAGAACCTTGTAAGCATGAGATGGGAATGTG
GATGGTGCCTCAGTGTCTTCTCTAACGGTTGTGTGGGCAGTGAATTTTGCCATGACCATCCGAT
CAATAGGCCTGTACTGGGGGCGCGCCTCAGCAACTTCGAAGTACTTGATGTAATACACAGCATC
CTCCTTCAGCAAAGGCTTGAATTGAGAAACATGACGTCCTGGGATCTGCGCATCCATCATGTAC
CCTTGTTGATGTTTGGATGTGTAAGAGACAAATAGCATGGAGGTAAAATAAGGCATGACCATGT
GCTTATTGCTATACCTGCTCATCAAGCAGGACTAAATCAAGTCGCAGAATCTTGTCAGGTTCAT
TTGCTGTAGTGAACTGCGAGAAGCGCGTGACCCGCACTCGGACTTGCCAATGGTGTGATTCCTG
TGTCACATTCCTTAGCATAGTGTAATCCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.194099025
Functional Information
Coding potential Y
Potential coding position 36326510-36328612(-)
36326062-36328533(-)
Potential amino acid sequence MLASLDAAHTSTLPSHDASVASSQHGSSPADAIEPHTIIGSSLQSMTPSTPLVLPDPKATTDSR
DDQHGTTPPTSEVLAMAQPDKKHKSSVIDEDLAQEGWITLC*(-)
MRILLRKDGLHYAKECDTGITPLASPSAGHALLAVHYSK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017