Detail information of Os06g0554600_circ_g.1


General Information
CircRNA Name Os06g0554600_circ_g.1
ID in PlantcircBase osa_circ_031121
Alias NA
Organism Oryza sativa
Position chr6: 21090472-21090642  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os06g0554600
Parent gene annotation Conserved hypothetical protein. (Os06t0554600-00)
Parent gene strand -
Alternative splicing Os06g0554600_circ_g.2 Os06g0554600_circ_g.3 Os06g0554600_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CG-CT
Number of exons covered Os06t0554600-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGATCCGGAGCTGCCTCACCGGCGCCGGGCTGCGGCCGCCGAAGCTGGTGCGCCACAGCGCCG
GCGACGGCGTCGCGGCCACGGtgttgatgaactcctccgcctccaggtccaccagcccggcccc
ggcgtcctcgccgccgtcgtccctgatcgggaacggcgagtcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 171
Transcript exons: 21090472-21090642
TGTTGATGAACTCCTCCGCCTCCAGGTCCACCAGCCCGGCCCCGGCGTCCTCGCCGCCGTCGTC
CCTGATCGGGAACGGCGAGTCGGTGATCCGGAGCTGCCTCACCGGCGCCGGGCTGCGGCCGCCG
AAGCTGGTGCGCCACAGCGCCGGCGACGGCGTCGCGGCCACGG

Genomic sequence TGTTGATGAACTCCTCCGCCTCCAGGTCCACCAGCCCGGCCCCGGCGTCCTCGCCGCCGTCGTC
CCTGATCGGGAACGGCGAGTCGGTGATCCGGAGCTGCCTCACCGGCGCCGGGCTGCGGCCGCCG
AAGCTGGTGCGCCACAGCGCCGGCGACGGCGTCGCGGCCACGG
Conservation Information
Conserved circRNAs NA
PMCS 0.262796735
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016