Detail information of Os06g0554600_circ_g.3


General Information
CircRNA Name Os06g0554600_circ_g.3
ID in PlantcircBase osa_circ_031123
Alias Os06circ11412
Organism Oryza sativa
Position chr6: 21090603-21090721  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0554600
Parent gene annotation Conserved hypothetical protein. (Os06t0554600-00)
Parent gene strand -
Alternative splicing Os06g0554600_circ_g.1 Os06g0554600_circ_g.2 Os06g0554600_circ_g.4
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0554600-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTGGTCGCTGCTGTTGAGGATCTCGAAGACGCGGGCGATGTCCGCCGCGTCGTAGTTctggt
gcgccacagcgccggcgacggcgtcgcggccacggcggcgccgccgtcgcccagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGTGCGCCACAGCGCCGGCGACGGCGTCGCGGCCACGGCGGCGCCGCCGTCGCCCAGGAGCT
GGTCGCTGCTGTTGAGGATCTCGAAGACGCGGGCGATGTCCGCCGCGTCGTAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.180671919
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015