Detail information of Os06g0107750_circ_g.2


General Information
CircRNA Name Os06g0107750_circ_g.2
ID in PlantcircBase osa_circ_029340
Alias NA
Organism Oryza sativa
Position chr6: 479683-479784  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene Os06g0107700
Parent gene annotation Leaf-type ferredoxin-NADP+-oxidoreductase, Regulation of electro
n partitioning in the chloroplast (Os06t0107700-01)
Parent gene strand -
Alternative splicing Os06g0107750_circ_g.1 Os06g0107750_circ_igg.1 Os06g0107750_circ_g.3 Os06g0107750_circ_g.4 Os06g0107750_circ_g.5 Os06g0107750_circ_g.6 Os06g0107750_circ_g.7 Os06g0107750_circ_g.8 Os06g0107750_circ_g.9
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0107750-00:1
Os06t0107700-01:1
Os06t0107750-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTCCTTGAGCATTGGTCTGCTCCCTGCTCACAGCATAATCGACCCGGAActcccacagctct
tccttgtactctgccatcctggtctgaatgtacatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCCACAGCTCTTCCTTGTACTCTGCCATCCTGGTCTGAATGTACATCTTCTCTCCTTGAGCA
TTGGTCTGCTCCCTGCTCACAGCATAATCGACCCGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.275714869
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017