Detail information of Os06g0107750_circ_g.5


General Information
CircRNA Name Os06g0107750_circ_g.5
ID in PlantcircBase osa_circ_029342
Alias Os06circ00757
Organism Oryza sativa
Position chr6: 479915-481330  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0107700
Parent gene annotation Leaf-type ferredoxin-NADP+-oxidoreductase, Regulation of electro
n partitioning in the chloroplast (Os06t0107700-01)
Parent gene strand -
Alternative splicing Os06g0107750_circ_g.1 Os06g0107750_circ_igg.1 Os06g0107750_circ_g.2 Os06g0107750_circ_g.3 Os06g0107750_circ_g.4 Os06g0107750_circ_g.6 Os06g0107750_circ_g.7 Os06g0107750_circ_g.8 Os06g0107750_circ_g.9
Support reads 3
Tissues leaf and panicle
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os06t0107750-00:5
Os06t0107700-01:6
Os06t0107750-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGTGATCTTGGTGTTGAGGAGGCACTTGCCGACGTAGGGCTCCTTGGGCCTGTACTTGTTGGT
GACGACGCCCTCGTCATGCTTCTTGGATATCTTCTCctccttgtagagtaaagaactgctagtt
gggactcccaagaagagccaagccagaccattgaactgcacaagagttcacacatattgtttaa
aacaaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTTGTAGAGTAAAGAACTGCTAGTTGGGACTCCCAAGAAGAGCCAAGCCAGACCATTGAAC
TGCACAAGAGTTCACACATATTGTTTAAAACAAAGAAAAAAATCATTTGGAGAAATAAAGTATG
AATTTTAAGATTTTGAAACAAGCATAAAGTCTGAAAACTAATGATGCAACATTGGTACCTTGTA
GTCATCATACTTCTCAAAAAACATTTTCCACAAGAATGAGCGGAACGGGGCAATACCAGTACCG
GTCGCAAGCTGCAAGTAACCGCACAAGGTTAAAATTTGTTGTGGTGTAGATTTTTTGAGATGGA
TCAATTCACCATGCAATTTAAGCTCACCATTATAATATTAGCATTGGGATCTTTGGGCATGAGC
ATTTCTTTGCCTACTGGTCCGGTTATCTTGACATCAGAACCAGGCTTCAAGTCACCTATATTAG
CAAGGTGAAGTAGATGTGAGACATGACCCCGCAAAAAGTAGATGTGAGACATAAACTTATTGAA
TGGAGAATCATTATATGCAGGTTACATGTTGAATCAAATATAATTTGATGGATCATATTGATTA
TTCAAGATTAGAGCTAGCAGCATGTTGTTTTCAGTGGGAAAAAAACTAGCAGATTGAGATATGT
AAGACTTAAACTGAATCTCTGAAATCTGTAACAAATTAATATGTTAGTATTCAGGTTCAGAGCA
GCAGCAAAGCGCAGTACTCTGAATATATACTGTGTGAAACTATTTGTTGATCAGGACAGCAGAA
TGCAGTACTCTGAATACCGTCTTGAGAAGAGCTGAATGCAAACTAATGCAGTAAAATTCAGAAT
GCAATTGTGATCATCATGAGAAGAATGCAGACGAACTCACAGAGGAAGTTGGAGCAGACTCCTT
TGACAATCTCTCCCTGGTCGTTGGTGTAAACGAGCCTCTTGACGCAGAGTGAAACCTAGAGGTA
CAAGTGAAGATGATTATCTGGTGTGAAGAAAGGAGATCGATCCGATGAGAAGGAATGAGATTGA
ATAAGGAGGAGAAGAGAAGAGGGGGACTGACGGTCTTGGAGTCGCCGAAGTCGCCGAGAGCGCT
GCTGGCGATGGAGTAGAGCCTGAGCTTGTGCGGCTTGCCGTTCTTGTCGACGCCGTCGGCGATG
ACGCCGATGGACTGCCCCTCTCTGTAGGGGATCTCACCTGCAATCCTGAGTAGTGAGTAATCAA
GGATTGGATTGGATTGGATTGGATTGGATAGGATGGATGATGAGTTACAGACCCTCGGTGCTGA
AGACCATGTGCCATGTCTCGCCGGGCGCGTCGTCGGCGGTGATCTTGGTGTTGAGGAGGCACTT
GCCGACGTAGGGCTCCTTGGGCCTGTACTTGTTGGTGACGACGCCCTCGTCATGCTTCTTGGAT
ATCTTCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.16491825
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015