Detail information of BGIOSGA005350_circ_g.5


General Information
CircRNA Name BGIOSGA005350_circ_g.5
ID in PlantcircBase osi_circ_000322
Alias NA
Organism Oryza sativa ssp. indica
Position chr2: 37374175-37374697  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method DCC
Parent gene BGIOSGA005350
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA005350_circ_g.1 BGIOSGA005350_circ_g.2 BGIOSGA005350_circ_g.3 BGIOSGA005350_circ_g.4 BGIOSGA005350_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AC-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACAGATGTTAGGTCCTTCCTAGTTTCCTTTGAAGCAAAACTTCCTATCTTCTGGTGGTTCCT
GATGCAGATCAAAAATCATAACAACACTACTTATTAgctgatactatgcactttgtgcatttat
gttttctcaggatacacacaacatgggcaagcaataacatatggcaaccacaatgacacaagga
attcagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGATACTATGCACTTTGTGCATTTATGTTTTCTCAGGATACACACAACATGGGCAAGCAATA
ACATATGGCAACCACAATGACACAAGGAATTCAGTATACATGGCTTGAAAGCAAAACTCAATCC
ACAAAACTTGGACAAAAACAGACCAAAGAATATCCAAATTTAATTGTTCTTTCAATGTACCTAA
AGACTCATGGAAGCATTTGGTGTCACATCCGTTATTTAAGTCCAATGGCATTTAAAGGAAGTGG
TCCAATTGACAACGATATAAAGCGATACTCCCTCTCAATGAGATTTTAGCCATGGATTAATAAA
CATATAAAGGTGTTTTGTAAATATATTAGCTACTATCGACCCTGCTTAGTAGCTACTAATAACT
TAATAATAAAGCAACTGCCCATGTTTCATTTGGTGAATTGAACAGATGTTAGGTCCTTCCTAGT
TTCCTTTGAAGCAAAACTTCCTATCTTCTGGTGGTTCCTGATGCAGATCAAAAATCATAACAAC
ACTACTTATTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019