Detail information of BGIOSGA032220_circ_g.2


General Information
CircRNA Name BGIOSGA032220_circ_g.2
ID in PlantcircBase osi_circ_008824
Alias Chr10:6355400_6357667(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 4851521-4853788  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA032220
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032220_circ_g.1 BGIOSGA032220_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032220-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGAAAATCTGAGTCTGTGGGATATATGTTGCTGAACAATTTCTTTTTGGGCCTTTGTTACTCC
CCCACTGGCTTTATCTTGATCTCTGAGTAATATGTCccaataatcaaggataatctgtctaagc
ttagcttctagtcgaatgaatagtggggttctctcaaaatcttgtttgtcatgtgccggctcaa
taaaattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAATAATCAAGGATAATCTGTCTAAGCTTAGCTTCTAGTCGAATGAATAGTGGGGTTCTCTCA
AAATCTTGTTTGTCATGTGCCGGCTCAATAAAATTTGCCTCCAGTACACCTAAATCATGAAAAT
TGTCATCCAGAGAGAAAAAAAAAGTAAAATGTGAATGATGACAGCATTAATTAAACATAAAACT
CACCAACAACACTTCTTCCTCTACTAGATCCCTCTTGAAGGACCTTCCAGAAGGGCTGTAAAGG
AACAAAAAATAGAAAATCAGTTCCAACCTATCTGCATCGGTAATTGGACCACTAGAACTACACA
TCTTTAAATGGCAAGACCAAGCTAAGCACCTCAATTTTGAGCTAAGAAGAAAATCCACTCAACT
ATATTAGAATGATGATGAGCATTTAGATCTCTCATCGAGTTGGTTTGTTCATAAATTAACAGCA
GAAAGCAAGCATACTATCATAGAAACAATATGGTACCAGAAAGCTTAATATTCCTTGCATAGCA
GTTCAAGATACAACAAAAGATGTGGGGATATGCATACCATCTTTTAAAAAAGGATTCTTAAAAG
TTAAAATAGGAAAATGGAAGATTGGAGTGGCATAATTTGTTGAGTCCTAGAGGAAGAACACACT
AAGCATTCAGGAACTTGAGCTTACATACAATTTCATCACACACACACACAAAGCATTGGAAATT
GGAATTCAGAGAAATTTGTAATTCCAGAGTGTGTAGAAATTTTCCTATCCTATGATATTTCTTT
AAAGCAACCGTACAATTCAAAGGTTAACCATAGACATTTTTCCTTTGTTGGAATGAAATCCTCC
AGTTTTCATCCAAAGTTGCTTTGTTCCAAGTTCCAACTAGGCCCTCAATGCTCAGTGAAGGCTA
AAAAAAAAGCATAGATTATTTAATCCAACTTTATTATCAATCTAGAATGCATTTGAGTCCTGAC
AATGGGTTAGCAGAAACAGTTGTGAATTAATTTGACTTATGTTCTCGACTGACTACGGAATAAT
AAAAGGCAATATCTTGGAGAACCAGACTTTGTGCATGTAAATCAGCTTAGACCAGAATTTCAAA
AAAAAAAAAGAAAGATGAATGTATTAAAACAATTGGCACAACAGCTGGCATTAACACCCGTCTA
TCATTCCAAAAATCTTGTGGGAGACTGAAACAAAGCAAATTTGTCAGAAAGTAGTATGCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTATGCTACCTGCTGAGGGTTCAAAATGAACCTT
TCTAGTATGAAGTAGTACACTCCTATCTAGTCAGTCTTCCCTCATACTTCCTGACATCCCACAT
GCAGTTGGTATATTAGAATATTAGATAAACCTAAGTTCTCAGTATACAAGGACATCCTTCAGAC
CTTCACTTATAGGAGAAACCCTGCTCCTACATGCTAAGATCAAAGCAACATGATGCATAACAGA
GACAATGACAATGGCAAAAGAATGCATGGACAAATAATCCATGTATGGAGAGAGTGGTTACCAT
TATTAGCCGATTTTTATGGTAAACATTCATCCCAAAAATCCCCAGAACAGGTGCCTCCTTTGCA
AAGCCAACATCGACTTTCACTGAGACCTGCAATTTAATTTCAATGTGGTTCCAAACAAAGTAAA
CAAATAATATCTCAAAGGAAACAAAATGTTGGTAACAAAAACTGAAGGAGATGTTCATGAGAAA
ATAGTAAGTTGGAAAATGCAATTGACTACTGTAGCTTCAATCAACAGATATTGCCAAAAGGAAT
AATCAGATAAACTCAGAGCATGAACCTGATCATCCACTGCAGATAACTTGCATAAGTAAATGCG
TTGTAGGCACTACATGCGGACTACACTAACAAGAGAAGCAAATAAAAGCGATCCCACAATTATT
GAACAAATTTTACTTACCACTTGAGAATCATGTGCAACTTGAGGTTTGTAAGTAACTAATTTCT
TAAATTTCAGTTCATCAGCAATCCTGATCTGTTCAACGGGTTTTCCTCTTAATATAATTTGGAA
ATTTTCAAACTTCTTAAGGTAAAGGATGGAAGTATATGCCTGCATATTGACAAATACAAATCAT
AATTCAACTTCATAGGACTGAATTCAGACTACAAAAAGAAACAAAACCTACTCGCAATGAAAAT
CTGAGTCTGTGGGATATATGTTGCTGAACAATTTCTTTTTGGGCCTTTGTTACTCCCCCACTGG
CTTTATCTTGATCTCTGAGTAATATGTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021