Detail information of BGIOSGA032220_circ_g.1


General Information
CircRNA Name BGIOSGA032220_circ_g.1
ID in PlantcircBase osi_circ_008823
Alias Chr10:6354862_6358621(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 4850983-4854742  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA032220
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032220_circ_g.2 BGIOSGA032220_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032220-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCATCATCATCCTCGAAGTCAAGTTCTAAAAGACCATCATCGTTCATCCATAAATTGTATAT
TGCCACCTTAGTTCCATGACTAACAATATCCTTGAAcctgaaccattggctgtcagtccaatga
cttcggtatcatcatatgtctctggtagcaaatttgatgtatgccctcctgtcctcctactagt
ggaagctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAACCATTGGCTGTCAGTCCAATGACTTCGGTATCATCATATGTCTCTGGTAGCAAATTTG
ATGTATGCCCTCCTGTCCTCCTACTAGTGGAAGCTTTCTGCTGAGACTTAGGTCCAGGATTCCC
TGAATCTTTGAGAGCAGCCTTATACTGGGATCTTAATTGTGGATCCACTGGCTGGTAACCTATT
AAATGACACTTTTCTTTCCTGCAAATGCATTACATAGGCAGAATGAGAAAAATGGATGCATGCA
GAATCCAAGGCATGCACTATTTGCACTTAAGACATGATACAGGATGGTAACATCTGATGTGGCA
CACTTCATGGTTCCCAGGCACTGTTGCAAACAGCCCATTGTTTAGACCAAAGAAACAAGCAACA
GGTTTGTTCCTATTGAATCTTGGGCAGGAATTTGAAATGTAATGTAATAACAATAGTAACAACT
AGATTATGACTCAAAAGCATCGATTTCTTCAAAATGTGCATTTCATGTTGCCAGAGAATGAATA
CTGAACTGAATTACTCAAGGTACGTACCAATAATCAAGGATAATCTGTCTAAGCTTAGCTTCTA
GTCGAATGAATAGTGGGGTTCTCTCAAAATCTTGTTTGTCATGTGCCGGCTCAATAAAATTTGC
CTCCAGTACACCTAAATCATGAAAATTGTCATCCAGAGAGAAAAAAAAAGTAAAATGTGAATGA
TGACAGCATTAATTAAACATAAAACTCACCAACAACACTTCTTCCTCTACTAGATCCCTCTTGA
AGGACCTTCCAGAAGGGCTGTAAAGGAACAAAAAATAGAAAATCAGTTCCAACCTATCTGCATC
GGTAATTGGACCACTAGAACTACACATCTTTAAATGGCAAGACCAAGCTAAGCACCTCAATTTT
GAGCTAAGAAGAAAATCCACTCAACTATATTAGAATGATGATGAGCATTTAGATCTCTCATCGA
GTTGGTTTGTTCATAAATTAACAGCAGAAAGCAAGCATACTATCATAGAAACAATATGGTACCA
GAAAGCTTAATATTCCTTGCATAGCAGTTCAAGATACAACAAAAGATGTGGGGATATGCATACC
ATCTTTTAAAAAAGGATTCTTAAAAGTTAAAATAGGAAAATGGAAGATTGGAGTGGCATAATTT
GTTGAGTCCTAGAGGAAGAACACACTAAGCATTCAGGAACTTGAGCTTACATACAATTTCATCA
CACACACACACAAAGCATTGGAAATTGGAATTCAGAGAAATTTGTAATTCCAGAGTGTGTAGAA
ATTTTCCTATCCTATGATATTTCTTTAAAGCAACCGTACAATTCAAAGGTTAACCATAGACATT
TTTCCTTTGTTGGAATGAAATCCTCCAGTTTTCATCCAAAGTTGCTTTGTTCCAAGTTCCAACT
AGGCCCTCAATGCTCAGTGAAGGCTAAAAAAAAAGCATAGATTATTTAATCCAACTTTATTATC
AATCTAGAATGCATTTGAGTCCTGACAATGGGTTAGCAGAAACAGTTGTGAATTAATTTGACTT
ATGTTCTCGACTGACTACGGAATAATAAAAGGCAATATCTTGGAGAACCAGACTTTGTGCATGT
AAATCAGCTTAGACCAGAATTTCAAAAAAAAAAAAGAAAGATGAATGTATTAAAACAATTGGCA
CAACAGCTGGCATTAACACCCGTCTATCATTCCAAAAATCTTGTGGGAGACTGAAACAAAGCAA
ATTTGTCAGAAAGTAGTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTATGCTA
CCTGCTGAGGGTTCAAAATGAACCTTTCTAGTATGAAGTAGTACACTCCTATCTAGTCAGTCTT
CCCTCATACTTCCTGACATCCCACATGCAGTTGGTATATTAGAATATTAGATAAACCTAAGTTC
TCAGTATACAAGGACATCCTTCAGACCTTCACTTATAGGAGAAACCCTGCTCCTACATGCTAAG
ATCAAAGCAACATGATGCATAACAGAGACAATGACAATGGCAAAAGAATGCATGGACAAATAAT
CCATGTATGGAGAGAGTGGTTACCATTATTAGCCGATTTTTATGGTAAACATTCATCCCAAAAA
TCCCCAGAACAGGTGCCTCCTTTGCAAAGCCAACATCGACTTTCACTGAGACCTGCAATTTAAT
TTCAATGTGGTTCCAAACAAAGTAAACAAATAATATCTCAAAGGAAACAAAATGTTGGTAACAA
AAACTGAAGGAGATGTTCATGAGAAAATAGTAAGTTGGAAAATGCAATTGACTACTGTAGCTTC
AATCAACAGATATTGCCAAAAGGAATAATCAGATAAACTCAGAGCATGAACCTGATCATCCACT
GCAGATAACTTGCATAAGTAAATGCGTTGTAGGCACTACATGCGGACTACACTAACAAGAGAAG
CAAATAAAAGCGATCCCACAATTATTGAACAAATTTTACTTACCACTTGAGAATCATGTGCAAC
TTGAGGTTTGTAAGTAACTAATTTCTTAAATTTCAGTTCATCAGCAATCCTGATCTGTTCAACG
GGTTTTCCTCTTAATATAATTTGGAAATTTTCAAACTTCTTAAGGTAAAGGATGGAAGTATATG
CCTGCATATTGACAAATACAAATCATAATTCAACTTCATAGGACTGAATTCAGACTACAAAAAG
AAACAAAACCTACTCGCAATGAAAATCTGAGTCTGTGGGATATATGTTGCTGAACAATTTCTTT
TTGGGCCTTTGTTACTCCCCCACTGGCTTTATCTTGATCTCTGAGTAATATGTCCTGAAAAATG
AGCAACAGAACATAAACTAAAACAGGTACAGCAATGGGAGAATGGAAGGTAGACATAGTCTGCG
AGAACTGAAGAACCATATTAATCCCAGTTCAATTATCAACTATCTGTAAGTTTGAGCACACGTA
GAAACACCCTGCCCTGAAAGAATACATAAATCACTGCATATGCATCTATGCGCACATCAGGTTT
CCCAATATAAACATTTAGATATTTAGTTCCCTGATATATCATATATATCATTATTCCAGCAAGT
ATAACATTAGTTCCCTCAGATATCATGCATGTCATTATTCCAGCATGTCTATTAACTCCAGAAC
AATTATATTTCCTTTCTTCCTTGAAAGAATCATAAGTGCATAGCATATATACTCAAGTGATTTT
CAGAAGCATGGCAAGGAAAATCATTATCTTTACTAGATGAAATCCCGCGAGTTGCTGCAGGAAA
TATTGTATGACAACAATAGAGATAAAGTGTAAGATGATCTGTCTTGTAGCTGAACAACGTAACT
TTATATACTTTGTACAATTTGCATCTTTGATCAATCAAAAAGCTATAAACAATTGAGATGATGT
GCTTTATGACAGTTTAGATCAAATAAAGATTGATCATCCATAGGCAAAAACTAAGGTCATGTGG
CTTAATGAGAGAAGAAAACGAAGGGAGACAATTTGGACCACAGGTTAATCATCGAAGGGCTAGA
GATGTGGCTTAATGAGAGAGGAGAGAAATAGCATTAACTACACTTAGGGGATGATATATGGTTG
TATAGGATATTGGATTCCTAGACCCTATGTTATCACGACCAGGCCATAATTGCAACGAAAATTA
TATGAAGACTTGCCTCATCATCATCCTCGAAGTCAAGTTCTAAAAGACCATCATCGTTCATCCA
TAAATTGTATATTGCCACCTTAGTTCCATGACTAACAATATCCTTGAA
Conservation Information
Conserved circRNAs osa_circ_006340
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021