Detail information of Os12g0479400_circ_g.4


General Information
CircRNA Name Os12g0479400_circ_g.4
ID in PlantcircBase osa_circ_011475
Alias NA
Organism Oryza sativa
Position chr12: 17574959-17575304  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0479400
Parent gene annotation Similar to Auxin response factor 1. (Os12t0479400-01);Similar to
Auxin response factor 24. (Os12t0479400-02);Similar to Isoform
2 of Auxin response factor 24. (Os12t0479400-03)
Parent gene strand -
Alternative splicing Os12g0479400_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0479400-02:2
Os12t0479400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCCACACCTGAGAAATATGAAGGCATCTCCAGCAACAAGGCGTTTGGCACTCACAAAAACAC
TCCAACCACTCTGGAGAAGGTGTCTTCGTGGCTGACcttggcttgtagtacacagtgaacatgg
ttccagtgttcactgcatgccatgcagttgcaagaacaccaagatgcatactgtggcttgatat
gaccgaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 256
Transcript exons: 17574959-17575123,17575214-17575304
CTTGGCTTGTAGTACACAGTGAACATGGTTCCAGTGTTCACTGCATGCCATGCAGTTGCAAGAA
CACCAAGATGCATACTGTGGCTTGATATGACCGAAGATGGAATATTAGCTTGTTGTCTCATTGC
ACGCCGAACTCCAACTCGTAGTTCCCCATTCTCACCTCTGAGAAATATGAAGGCATCTCCAGCA
ACAAGGCGTTTGGCACTCACAAAAACACTCCAACCACTCTGGAGAAGGTGTCTTCGTGGCTGAC

Genomic sequence CTTGGCTTGTAGTACACAGTGAACATGGTTCCAGTGTTCACTGCATGCCATGCAGTTGCAAGAA
CACCAAGATGCATACTGTGGCTTGATATGACCGAAGATGGAATATTAGCTTGTTGTCTCATTGC
ACGCCGAACTCCAACTCGTAGTTCCCCATTCTCACCTCTATTCATGTAATAAAAGGGGAGCTTT
GGTTAAGTAGACTGGAGCAGAAAACAAGTAACATGAATTGTTCAGCATGAAAAAATTCCACACC
TGAGAAATATGAAGGCATCTCCAGCAACAAGGCGTTTGGCACTCACAAAAACACTCCAACCACT
CTGGAGAAGGTGTCTTCGTGGCTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.40974723
Functional Information
Coding potential Y
Potential coding position 17575011-17575259(-)
17575085-17575120(-)
Potential amino acid sequence MACSEHWNHVHCVLQAKVSHEDTFSRVVGVFL*(-)
MRQQANIPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRSATKTPSPEWLECFCECQTPCC
WRCLHISQR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017