Detail information of Os01g0275800_circ_g.2


General Information
CircRNA Name Os01g0275800_circ_g.2
ID in PlantcircBase osa_circ_001297
Alias Os_ciR6662
Organism Oryza sativa
Position chr1: 9647621-9649625  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method find_circ
Parent gene Os01g0275800
Parent gene annotation Hypothetical gene. (Os01t0275800-01)
Parent gene strand +
Alternative splicing Os01g0275800_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os01t0275800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGCCATGGTAAGTCCACCTGTACATCAGTAGTATTGGACCATTATTTTGTGGAGTAGGTCAT
GGTAATAGTGTAAATAAGCTGCCAATTTCTTAATTCctgtatattttggaaactgatactcgaa
tacttttcctgtggttgttgtaaaatacattgaagttgcatcattagattcatcttgttgcact
tctgtgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTATATTTTGGAAACTGATACTCGAATACTTTTCCTGTGGTTGTTGTAAAATACATTGAAGT
TGCATCATTAGATTCATCTTGTTGCACTTCTGTGATCGAACTAAGTCTTTGACTCTTAGGAGCT
CCATGTTTATACCATTTCCACTTCCTTCTATGCAAGCGCCGCTCCACTAATAAACCATCCTGCC
AATCTATAAAATATCTTTAGCAAATAGATAAATACCGTTTTACAATGGAAATAGAGGTCCTAGC
CATGGCATAATTTTACTTTATTGGTTAACAAGAATTCCTATTATTACATATATATTACTCTGAA
CTTATCTATAATGAGTTCATGAAGAGGCTGTCAATTTCTCTTCAATTGTATTATAACACATGAT
CGGTCATAATGTTCTTGTTGACACCCTATTTTGGTTGTTTTGCTTCTGCTACAAGATGTCCAAC
TAAGGAACCATATACATGTTTCTTTTTCTTTTAGTACATTTCTTGATATCATACTTTTTGCAAA
ACTATCATAAAAACCACAACTTTAAACAGGATTTTAAGGAACCATATGAACTTTGCAAAAAATG
TTTCAGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGAT
AAGGCACATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACAT
CAGGTACCTTAAACAGACTGAATATGTCTTAAAAAGTATTCTTTTGTAGAAAAAGGTTTGTGCA
AAAGCATGATCTCAACTTCTCAAGAAATATACTAATCTTTTTGCAAGTACCTTCATCAGCTCTG
TCAGTCTATCAGGAGCAGATAATATATTTTTGAGATTATTTTCATATTATAACAATCAGCATCG
CTAGACTGTATGCATTTATAATGTTGCTGCATTAGCTTGGATCCAGTAAGTCATTTCTGAAAAG
AAAATCCTTGCATACCTTTGTTATCAAGAAAAGTGATACTGAGTTAGATCCTAGCAGGCCATGT
AAAGCACACCCAACTGATGAGCTTAATGAGACATTCTCTGCTGTTTCTTCACTCCATATGTGCT
TTTTCCATGATGGTCTTGATTCTCTGTCGAACTCATACAAGTCTCCTGTAGAACTGCACCACAC
TTTCCCATCTTAGCACTGAAATACAGTAATTATACAAGGTATTCTACATCTTGGGATAAAAACA
TAAATGAGTATAGCCTTTTTCTTGTTTGAAAAACTGAGCGTAGCTTAGCTAGCGGGAGGTCTGA
ATGACCTTATTTGAAATCTAAGAGTGGCTTATTTGGTGGAGGTATACACCCTGCTACTTGAAAT
CCTTATGGCTCTAGATATTCTTATGCTGTATTTGTCTAATAGGTGGATCATCCATCTGCATAAC
ATATCAATGATTCTAGGAAGGTACTCCATTAGAGATACCTTCACTTCAAAGAAATATCAACAGT
TGATCAATTTTAAGTGAAGGTACATCTAATGCTTTCTAATGCCTTCCAAGTACTTGTAAAACAT
CTCAACCATGGTAGTTCTTAAAATAAAGGTGCCTCTAGTTTCTTTCAGGCACCAAAAATATCTC
AAATGTCTAAATTCTAATGTACACAGAGCAGGGGCAGAAGATAAGGAAAATAGTGCATAAACAT
TGTCATTTTTCTCACCTTCCTCTCTCCCCATTTGTACAAGTTGACTTTTGTTTCAGATATTCAA
GATTCACAAAAACAATAGAGAACCGACTATTGAACCAGTTTATTTTCCCACTAAAGTAGTTTGG
ATTGACACAACCCATTACCTCCTAAAGAACACATGACCATACCTTACTGTGAACACTGTCCCTG
GTCTTGCATTTCCAGCATCAGATATATATGATACATCTCCTCCTGGTGGGTGGCCATGGTAAGT
CCACCTGTACATCAGTAGTATTGGACCATTATTTTGTGGAGTAGGTCATGGTAATAGTGTAAAT
AAGCTGCCAATTTCTTAATTC
Conservation Information
Conserved circRNAs osi_circ_001972*
PMCS 0.555056027
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015