Detail information of Os10g0510000_circ_igg.1


General Information
CircRNA Name Os10g0510000_circ_igg.1
ID in PlantcircBase osa_circ_007634
Alias Os_ciR6842
Organism Oryza sativa
Position chr10: 19610444-19610600  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0510000_circ_igg.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGAT
TTGAGATTCTTGAAaaaaaaattgttgggtctgatggcttgtctatgggtgtatctactctgat
tagctccggtttttgtgtatgccaatata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 157
Transcript exons: 19610444-19610600
AAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTT
GTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTG
ATTTCATAAATTGATTTGAGATTCTTGAA

Genomic sequence AAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTT
GTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTG
ATTTCATAAATTGATTTGAGATTCTTGAA
Conservation Information
Conserved circRNAs osi_circ_008597 osi_circ_008598
PMCS 0.37671189
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015