Detail information of BGIOSGA016117_circ_g.1


General Information
CircRNA Name BGIOSGA016117_circ_g.1
ID in PlantcircBase osi_circ_014223
Alias Chr04:13828870_13829541(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12188372-12189043  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016117
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016117-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTCAACTCAGAGGTGGCAATCGTGATGAGAAAAATATCCTGATGGCTAAGCAGTTTCCGAAC
TCCAAGCATTTCCTGACTTATAGGCATTCATTAAGGgattgattatgaaaatcaacaaggttgg
aaaagaaagccacggactacatttgctgattggaacacaagcttacagactattattacatggt
cgccatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGATTATGAAAATCAACAAGGTTGGAAAAGAAAGCCACGGACTACATTTGCTGATTGGAAC
ACAAGCTTACAGACTATTATTACATGGTCGCCATATTCAACTGAAGCAGAACTACTTGAGCAGG
TATAATTTATGCAAGATCACTAAACAAATATGTATTTCTACTGTAATTATCAACATGATTATTG
GTTCAGTTGCTTGAAGTTTCTTTGTCATGACCTTTCCTTTCAAAAGAAAAGGGCATCTGTGCAT
ACTCGACAATGGAAGATGTTTCCTGGAGCTGTCTATATTTTATTTTCCCATTTTTAGAAACAAA
AACATATTATTGCGAACCTCAGCACGTTCCAAATGGCTGTTTATTTTGCAGTTTAGTTCTATAA
AGGAACAAGGGACTCGTATTATCATTTACAATCTTTGGGAGGACGATGAAGGACATTTGGAGCT
TGATTTTGATGAGGACATACACGTATGTTCTACTACTAAGTATTAATAACACTGCGCCACCATG
CGCACCATATATTTTAGTTAAGCAGCTAGTAAGGTTTTTAATGATTGTGGAATGACAGGATATT
CAACTCAGAGGTGGCAATCGTGATGAGAAAAATATCCTGATGGCTAAGCAGTTTCCGAACTCCA
AGCATTTCCTGACTTATAGGCATTCATTAAGG
Conservation Information
Conserved circRNAs osa_circ_023385
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021