Detail information of Os04g0310900_circ_ig.2


General Information
CircRNA Name Os04g0310900_circ_ig.2
ID in PlantcircBase osa_circ_023385
Alias NA
Organism Oryza sativa
Position chr4: 14088302-14088972  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 1
Tissues shoot, seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTCAACTCAGAGGTGGCAATCGTGATGAGAAAAATATCCTGATGGCTAAGCAGTTTCCGAAC
TCCAAGCATTTCCTGACTTATAGGCATTCATTAAGGattgattatgaaaatcaacaaggttgga
aaagaaagccacggactacatttgctgattggaacacaagcttacagactattattacatggtc
gccatatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGATTATGAAAATCAACAAGGTTGGAAAAGAAAGCCACGGACTACATTTGCTGATTGGAACA
CAAGCTTACAGACTATTATTACATGGTCGCCATATTCAACTGAAGCAGAACTACTTGAGCAGGT
ATAATTTATGCAAGATCACTAAACAAATATGTATTTCTACTGTAATTATCAACATGATTATTGG
TTCAGTTGCTTGAAGTTTCTTTGTCATGACCTTTCCTTTCAAAAGAAAAGGGCATCTGTGCATA
CTCGACAATGGAAGATGTTTCCTGGAGCTGTCTATATTTTAGTTTCCCATTTTTAGAAACAAAA
ACATATTATTGCGAACCTCAGCACGTTCCAAATGGCTGTTTATTTTGCAGTTTAGTTCTATAAA
GGAACAAGGGACTCGTATTATCATTTACAATCTTTGGGAGGACGATGAAGGACATTTGGAGCTT
GATTTTGATGAGGACATACACGTATGTTCTACTACTAAGTATTAATAACACTGTGCCACCATGC
GCACCATATATTTTAGTTAAGCAGCTAGTAAGGTTTTTAATGATTGTGGAATGACAGGATATTC
AACTCAGAGGTGGCAATCGTGATGAGAAAAATATCCTGATGGCTAAGCAGTTTCCGAACTCCAA
GCATTTCCTGACTTATAGGCATTCATTAAGG
Conservation Information
Conserved circRNAs osi_circ_014223
PMCS 0.320410817
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017