Plant Circular RNA Database

Detail information of AT2G47510_circ_g.14

			
						 General Information
					
						CircRNA Name
						AT2G47510_circ_g.14
					
						ID in PlantcircBase
						ath_circ_018895
					
						Alias
						2:19500690-19501758
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 19500690-19501758  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G47510						
					
						Parent gene annotation
						
							FUM1
							
						Parent gene strand
						+
					
						Alternative splicing
						
							2_circ_ag.17 AT2G47440_circ_g.1 AT2G47440_circ_g.2 AT2G47450_circ_g.1 AT2G47470_circ_g.1 AT2G47470_circ_g.2 AT2G47470_circ_g.3 AT2G47470_circ_g.4 AT2G47470_circ_g.5 AT2G47470_circ_g.6 AT2G47470_circ_g.7 AT2G47470_circ_g.8 AT2G47470_circ_g.9 AT2G47470_circ_g.10 AT2G47470_circ_g.11 AT2G47490_circ_g.1 AT2G47500_circ_g.1 AT2G47500_circ_g.2 AT2G47500_circ_g.3 AT2G47500_circ_g.4 AT2G47500_circ_g.5 AT2G47500_circ_g.6 AT2G47500_circ_g.7 AT2G47500_circ_g.8 AT2G47500_circ_g.9 AT2G47500_circ_g.10 AT2G47510_circ_g.1 AT2G47510_circ_g.2 AT2G47510_circ_g.3 AT2G47510_circ_g.4 AT2G47510_circ_g.5 AT2G47510_circ_g.6 AT2G47510_circ_g.7 AT2G47510_circ_g.8 AT2G47510_circ_g.9 AT2G47510_circ_g.10 AT2G47510_circ_g.11 AT2G47510_circ_g.12 AT2G47510_circ_g.13 AT2G47510_circ_g.15 AT2G47510_circ_g.16 AT2G47510_circ_g.17 AT2G47590_circ_g.1 AT2G47600_circ_g.1 AT2G47610_circ_g.1 AT2G47610_circ_g.2 AT2G47610_circ_g.3 AT2G47610_circ_g.4 AT2G47610_circ_g.5 AT2G47610_circ_g.6 AT2G47610_circ_g.7 AT2G47630_circ_g.1 AT2G47640_circ_g.1 AT2G47650_circ_g.1 AT2G47650_circ_g.2 AT2G47650_circ_g.3 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G47510.2:7
AT2G47510.3:7
AT2G47510.1:7

General Information
CircRNA Name	AT2G47510_circ_g.14
ID in PlantcircBase	ath_circ_018895
Alias	2:19500690-19501758
Organism	Arabidpsis thaliana
Position	chr2: 19500690-19501758 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G47510
Parent gene annotation	FUM1
Parent gene strand	+
Alternative splicing	2_circ_ag.17 AT2G47440_circ_g.1 AT2G47440_circ_g.2 AT2G47450_circ_g.1 AT2G47470_circ_g.1 AT2G47470_circ_g.2 AT2G47470_circ_g.3 AT2G47470_circ_g.4 AT2G47470_circ_g.5 AT2G47470_circ_g.6 AT2G47470_circ_g.7 AT2G47470_circ_g.8 AT2G47470_circ_g.9 AT2G47470_circ_g.10 AT2G47470_circ_g.11 AT2G47490_circ_g.1 AT2G47500_circ_g.1 AT2G47500_circ_g.2 AT2G47500_circ_g.3 AT2G47500_circ_g.4 AT2G47500_circ_g.5 AT2G47500_circ_g.6 AT2G47500_circ_g.7 AT2G47500_circ_g.8 AT2G47500_circ_g.9 AT2G47500_circ_g.10 AT2G47510_circ_g.1 AT2G47510_circ_g.2 AT2G47510_circ_g.3 AT2G47510_circ_g.4 AT2G47510_circ_g.5 AT2G47510_circ_g.6 AT2G47510_circ_g.7 AT2G47510_circ_g.8 AT2G47510_circ_g.9 AT2G47510_circ_g.10 AT2G47510_circ_g.11 AT2G47510_circ_g.12 AT2G47510_circ_g.13 AT2G47510_circ_g.15 AT2G47510_circ_g.16 AT2G47510_circ_g.17 AT2G47590_circ_g.1 AT2G47600_circ_g.1 AT2G47610_circ_g.1 AT2G47610_circ_g.2 AT2G47610_circ_g.3 AT2G47610_circ_g.4 AT2G47610_circ_g.5 AT2G47610_circ_g.6 AT2G47610_circ_g.7 AT2G47630_circ_g.1 AT2G47640_circ_g.1 AT2G47650_circ_g.1 AT2G47650_circ_g.2 AT2G47650_circ_g.3
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G47510.2:7 AT2G47510.3:7 AT2G47510.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGCTGAGTTTTGGAATCCTTATCCTCTTTACCAGAAAATCGGGTATGACAATGCTGCAGCAGTT
GCCAAGAAAGCTCACAAAGAAGGATGTACATTGAAGgctgcacacgatgcttgtgttgaaacca
gtgggtcacttaacacaatcgccacatcgctgatgaagatcgccaatgatatacgttttcttgg
aaggtatg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 504
Transcript exons: 19500690-19500784,19500867-19500933,19501017-19501067,19
501174-19501269,19501360-19501458,19501553-19501582,1950
1693-19501758
GCTGCACACGATGCTTGTGTTGAAACCAGTGGGTCACTTAACACAATCGCCACATCGCTGATGA
AGATCGCCAATGATATACGTTTTCTTGGAAGTGGCCCAAGATGTGGTCTTGGTGAACTTGTACT
ACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTGGGAAGGTAAATCCTACACAGTGTGAGGCC
TTGACTATGGTTTGTGCACAGGTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATG
GTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACATTCCGTCAGATT
AATAGCAGATGCTTCAGCTTCGTTCGAGAAAAACTGTGTGAGGGGCATTGAGGCCAACAGAGAA
AGAATCTCAAAGCTATTGCACGAGTCTCTTATGCTTGTGACATCATTGAATCCGAAAATCGGGT
ATGACAATGCTGCAGCAGTTGCCAAGAAAGCTCACAAAGAAGGATGTACATTGAAG
						
					

						Genomic sequence
						
							GCTGCACACGATGCTTGTGTTGAAACCAGTGGGTCACTTAACACAATCGCCACATCGCTGATGA
AGATCGCCAATGATATACGTTTTCTTGGAAGGTATGGATCTAATCTATAGGGATTATTTTTTTC
TTTCTTTAACATGCACTATGTCCTTATGGTTTACCATGTCTTTATATAGTGGCCCAAGATGTGG
TCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTGTATGAATGCAA
TCTTCCTTTGCTCTTCTGTCCTTTTCTTTTTCACTAGTTTTGATTCAAATGAATTTTTATCTCT
TTCTCAGGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGGTAAGT
CCCATCTATCAATACATTCTTAGTACAGACCAATGAATCTAGATGCTAAGGTTGTATTATTGTT
CCTTGACTGTTTGGGTTGCAACCAATAACATTGCAGGTTATGGGAAACCATGTAGCTGTGACAG
TTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTT
ACATGTATGTCAATCATTTTCATTCTACGTCTGTTTCCTTGATTTTATATAAAAATATACCAGT
CTTAACCATTTGATCTCGCCTCTTTGACAGTCCGTCAGATTAATAGCAGATGCTTCAGCTTCGT
TCGAGAAAAACTGTGTGAGGGGCATTGAGGCCAACAGAGAAAGAATCTCAAAGCTATTGCACGA
GGTAGGCTTATTCTCGTTTGTTGGTCTGAAAATTTTCCATCAAACGAAAATGATATCTGGGAAC
TGATTATTTTGTTCCATGTATTTATCTGTAGTCTCTTATGCTTGTGACATCATTGAATCCGGTA
AGTCTCTAAATATTGAACTCCGCCTTTTTAGTCATCCGTTTTACCATTAGGATTACTAATGAAT
GTACTTTGATGCTGAGTTTTGGAATCCTTATCCTCTTTACCAGAAAATCGGGTATGACAATGCT
GCAGCAGTTGCCAAGAAAGCTCACAAAGAAGGATGTACATTGAAG
						
					

			
		

Sequences
Splice junction sequence	TGCTGAGTTTTGGAATCCTTATCCTCTTTACCAGAAAATCGGGTATGACAATGCTGCAGCAGTT GCCAAGAAAGCTCACAAAGAAGGATGTACATTGAAGgctgcacacgatgcttgtgttgaaacca gtgggtcacttaacacaatcgccacatcgctgatgaagatcgccaatgatatacgttttcttgg aaggtatg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 504 Transcript exons: 19500690-19500784,19500867-19500933,19501017-19501067,19 501174-19501269,19501360-19501458,19501553-19501582,1950 1693-19501758 GCTGCACACGATGCTTGTGTTGAAACCAGTGGGTCACTTAACACAATCGCCACATCGCTGATGA AGATCGCCAATGATATACGTTTTCTTGGAAGTGGCCCAAGATGTGGTCTTGGTGAACTTGTACT ACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTGGGAAGGTAAATCCTACACAGTGTGAGGCC TTGACTATGGTTTGTGCACAGGTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATG GTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACATTCCGTCAGATT AATAGCAGATGCTTCAGCTTCGTTCGAGAAAAACTGTGTGAGGGGCATTGAGGCCAACAGAGAA AGAATCTCAAAGCTATTGCACGAGTCTCTTATGCTTGTGACATCATTGAATCCGAAAATCGGGT ATGACAATGCTGCAGCAGTTGCCAAGAAAGCTCACAAAGAAGGATGTACATTGAAG
Genomic sequence	GCTGCACACGATGCTTGTGTTGAAACCAGTGGGTCACTTAACACAATCGCCACATCGCTGATGA AGATCGCCAATGATATACGTTTTCTTGGAAGGTATGGATCTAATCTATAGGGATTATTTTTTTC TTTCTTTAACATGCACTATGTCCTTATGGTTTACCATGTCTTTATATAGTGGCCCAAGATGTGG TCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTGTATGAATGCAA TCTTCCTTTGCTCTTCTGTCCTTTTCTTTTTCACTAGTTTTGATTCAAATGAATTTTTATCTCT TTCTCAGGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGGTAAGT CCCATCTATCAATACATTCTTAGTACAGACCAATGAATCTAGATGCTAAGGTTGTATTATTGTT CCTTGACTGTTTGGGTTGCAACCAATAACATTGCAGGTTATGGGAAACCATGTAGCTGTGACAG TTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTT ACATGTATGTCAATCATTTTCATTCTACGTCTGTTTCCTTGATTTTATATAAAAATATACCAGT CTTAACCATTTGATCTCGCCTCTTTGACAGTCCGTCAGATTAATAGCAGATGCTTCAGCTTCGT TCGAGAAAAACTGTGTGAGGGGCATTGAGGCCAACAGAGAAAGAATCTCAAAGCTATTGCACGA GGTAGGCTTATTCTCGTTTGTTGGTCTGAAAATTTTCCATCAAACGAAAATGATATCTGGGAAC TGATTATTTTGTTCCATGTATTTATCTGTAGTCTCTTATGCTTGTGACATCATTGAATCCGGTA AGTCTCTAAATATTGAACTCCGCCTTTTTAGTCATCCGTTTTACCATTAGGATTACTAATGAAT GTACTTTGATGCTGAGTTTTGGAATCCTTATCCTCTTTACCAGAAAATCGGGTATGACAATGCT GCAGCAGTTGCCAAGAAAGCTCACAAAGAAGGATGTACATTGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.241849746

Conservation Information
Conserved circRNAs	NA
PMCS	0.241849746

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G47510_circ_g.14

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