Detail information of AT2G47500_circ_g.8


General Information
CircRNA Name AT2G47500_circ_g.8
ID in PlantcircBase ath_circ_018879
Alias Ath_circ_FC5383
Organism Arabidpsis thaliana
Position chr2: 19493608-19495746  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G47500
Parent gene annotation Kinesin-like protein KIN-14I
Parent gene strand +
Alternative splicing 2_circ_ag.17 AT2G47440_circ_g.1 AT2G47440_circ_g.2 AT2G47450_circ_g.1 AT2G47470_circ_g.1 AT2G47470_circ_g.2 AT2G47470_circ_g.3 AT2G47470_circ_g.4 AT2G47470_circ_g.5 AT2G47470_circ_g.6 AT2G47470_circ_g.7 AT2G47470_circ_g.8 AT2G47470_circ_g.9 AT2G47470_circ_g.10 AT2G47470_circ_g.11 AT2G47490_circ_g.1 AT2G47500_circ_g.1 AT2G47500_circ_g.2 AT2G47500_circ_g.3 AT2G47500_circ_g.4 AT2G47500_circ_g.5 AT2G47500_circ_g.6 AT2G47500_circ_g.7 AT2G47500_circ_g.9 AT2G47500_circ_g.10 AT2G47510_circ_g.1 AT2G47510_circ_g.2 AT2G47510_circ_g.3 AT2G47510_circ_g.4 AT2G47510_circ_g.5 AT2G47510_circ_g.6 AT2G47510_circ_g.7 AT2G47510_circ_g.8 AT2G47510_circ_g.9 AT2G47510_circ_g.10 AT2G47510_circ_g.11 AT2G47510_circ_g.12 AT2G47510_circ_g.13 AT2G47510_circ_g.14 AT2G47510_circ_g.15 AT2G47510_circ_g.16 AT2G47510_circ_g.17 AT2G47590_circ_g.1 AT2G47600_circ_g.1 AT2G47610_circ_g.1 AT2G47610_circ_g.2 AT2G47610_circ_g.3 AT2G47610_circ_g.4 AT2G47610_circ_g.5 AT2G47610_circ_g.6 AT2G47610_circ_g.7 AT2G47630_circ_g.1 AT2G47640_circ_g.1 AT2G47650_circ_g.1 AT2G47650_circ_g.2 AT2G47650_circ_g.3
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G47500.2:10
AT2G47500.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGATACAATGTCTGCATATTTGCA
TATGGTCAAACTGGATCAGGAAAAACATTCACAATGcatcgaggagatatgaggcggctaattg
gctgagaaggatggttggagttgttggagctaaggatttgcctgcagagccaacagaagaaggg
cttaggct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1343
Transcript exons: 19493608-19493774,19493874-19494017,19494104-19494334,19
494420-19494491,19494610-19494678,19494767-19494841,1949
4913-19495038,19495122-19495203,19495293-19495562,194956
40-19495746
CATCGAGGAGATATGAGGCGGCTAATTGGCTGAGAAGGATGGTTGGAGTTGTTGGAGCTAAGGA
TTTGCCTGCAGAGCCAACAGAAGAAGGGCTTAGGCTTGGTTTAAGAAGTGGAATTATCCTTTGT
AAAGTCCTCAATAAGGTTCAACCTGGAGCTGTCTCAAAGGTTGTGGAAAGTCCTTGTGATGCCA
TTCTTGTTGCGGATGGAGCTCCGTTATCAGCATTTCAGTATTTTGAGAATGTTAGGAACTTTCT
TGTTGCTATACAGGAAATGGGGTTTCCAACATTTGAGGCATCTGATCTCGAGCAAGGAGGAAAT
GCTTCTCGAGTTGTGAATTGTGTTTTGGCTATCAAATCATATGATGAATGGAAACAAAGTGGTG
GAATTGGAGTTTGGAAATTTGGTGGCAACATTAAGCCTCCTGCACTTGGGAAGTCATCTTTTGT
CAGAAAAAACTCAGAGCCATTCATGAACTCTTTATCGAGAACCTCCTCGATCAACAATGAGAAA
GCTCCCTCTGAGAATGATTCTAACAAGCTGTCCAGTCCCAGTTCCTTGAGCACACTTGTTCGCG
CTGTTCTATCAGATAAAAAGCCTGAGGATGTGCCCAAACTGATTGAATCTCTGCTGAGTAAAGT
AGTCGAAGAGTTTGAAAATCGAGTTACAAATCAGTATGAGTTGGTTAGAGCAGCTCCAAGAGAA
TCAACTTCGTCACAGAACAACAGATCATTTCTTAAACCTCTTGGTGAAAGAGAGAGGGAAGAGA
AGAGTTTCAAAGCAATAAAGAAAGATGATCACAATAGTCAGATTCTTGACGAAAAGATGAAAAC
TCGCCAATTTAAACAACTGACAATCTTCAACCAACAACAAGAAGATATAGAAGGACTAAGACAG
ACGCTCTACACAACAAGGGCTGGTATGCAATTTATGCAGAAGAAATTTCAAGAAGAGTTCTCTT
CTCTTGGTATGCACGTTCATGGCCTTGCTCATGCTGCTTCTGGCTATCACCGAGTTCTTGAAGA
AAACCGAAAACTTTATAATCAAGTGCAGGATCTCAAGGGTAGCATCCGTGTTTATTGTCGGGTG
CGGCCATTTTTGCCTGGACAATCCAGCTTTTCTAGTACAATTGGGAACATGGAGGATGATACCA
TAGGGATCAATACTGCATCTAGACATGGAAAATCACTCAAATCCTTCACTTTCAACAAAGTCTT
TGGCCCATCTGCAACTCAAGAAGAGGTATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTT
GATGGATACAATGTCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATTCACAATG

Genomic sequence CATCGAGGAGATATGAGGCGGCTAATTGGCTGAGAAGGATGGTTGGAGTTGTTGGAGCTAAGGA
TTTGCCTGCAGAGCCAACAGAAGAAGGGCTTAGGCTTGGTTTAAGAAGTGGAATTATCCTTTGT
AAAGTCCTCAATAAGGTTCAACCTGGAGCTGTCTCAAAGGTGAAACCATTATCTTCTTCTTTTT
TTTCTTTTTTTTTTTTTTTTTTTGCTTAAATCCTGTTTTAGCAGCAGAGTTTGAGAAATTTGAT
CTTTCTTCAGGTTGTGGAAAGTCCTTGTGATGCCATTCTTGTTGCGGATGGAGCTCCGTTATCA
GCATTTCAGTATTTTGAGAATGTTAGGAACTTTCTTGTTGCTATACAGGAAATGGGGTTTCCAA
CATTTGAGGCATCTGATCTCGAGCAAGTATGTTGCTCAAGACCGATTTTGAGATTTCTCAGAAT
GTTCAAGAATTGCTGCTCATGAATATGCATCTCTCTTTTTTTTTGTAGGGAGGAAATGCTTCTC
GAGTTGTGAATTGTGTTTTGGCTATCAAATCATATGATGAATGGAAACAAAGTGGTGGAATTGG
AGTTTGGAAATTTGGTGGCAACATTAAGCCTCCTGCACTTGGGAAGTCATCTTTTGTCAGAAAA
AACTCAGAGCCATTCATGAACTCTTTATCGAGAACCTCCTCGATCAACAATGAGAAAGCTCCCT
CTGAGAATGATTCTAACAAGCTGGTTGGCCTCTTCAATTGTCTCTGGTTGGTTCTGTGTTCTCA
AGTGGAATATTTGATGTTTATGGTCTTTGTGCTTATGTTTTCAGTCCAGTCCCAGTTCCTTGAG
CACACTTGTTCGCGCTGTTCTATCAGATAAAAAGCCTGAGGATGTGCCCAAAGTAAGTTCGAGA
CTAGTTCACTTACCTGCTCTGCTATACAAAAACATTTGTCATTTCTCGTTACTTTAAATCGTCT
GGCTTTGTGGCTTGATGTAAGTGCTTATTGTTGTGGTAACAGCTGATTGAATCTCTGCTGAGTA
AAGTAGTCGAAGAGTTTGAAAATCGAGTTACAAATCAGTATGAGTTGGTAAGTTTCTTGTTTCT
ACGTCTGTCTCTTGGTTCAATTGGTTAGTCCACAAAATATCTTCTAATCTAAGGAGTTCTGTCA
TGCGAAGGTTAGAGCAGCTCCAAGAGAATCAACTTCGTCACAGAACAACAGATCATTTCTTAAA
CCTCTTGGTGAAAGAGAGGTAAAGTCTTCAATTTATTTCCGTAAAATAAAACTTAGAAGTTTTT
GCTGATTAATGAAGTGCCTTTGTAGAGGGAAGAGAAGAGTTTCAAAGCAATAAAGAAAGATGAT
CACAATAGTCAGATTCTTGACGAAAAGATGAAAACTCGCCAATTTAAACAACTGACAATCTTCA
ACCAACAACAAGAAGATATAGAAGTAAGCACTACACTGCCCACCATTTCTTTGAGTTTAGGATA
GCACAGATTCTGAGTGTATCTGCTGTTCTTTATGTTTATTAGGGACTAAGACAGACGCTCTACA
CAACAAGGGCTGGTATGCAATTTATGCAGAAGAAATTTCAAGAAGAGTTCTCTTCTCTTGGTAT
TCAGATCTTTCTTCTCTTACTTTCTAAGAAAGTTTTTTTTGGATATCCAAGAATTTGACACTAA
TGAATCTATATCTGTCTACAGGTATGCACGTTCATGGCCTTGCTCATGCTGCTTCTGGCTATCA
CCGAGTTCTTGAAGAAAACCGAAAACTTTATAATCAAGTGCAGGATCTCAAGGGTAGCATCCGT
GTTTATTGTCGGGTGCGGCCATTTTTGCCTGGACAATCCAGCTTTTCTAGTACAATTGGGAACA
TGGAGGATGATACCATAGGGATCAATACTGCATCTAGACATGGAAAATCACTCAAATCCTTCAC
TTTCAACAAAGTCTTTGGCCCATCTGCAACTCAAGGTAATGTAATTGAAATGCCTTGCTGTTAT
TCTCTAGTGATTGAATTTAACCTGAAGGATCTATCTTGCTCTTTGTAGAAGAGGTATTTTCTGA
TATGCAGCCATTGATCCGTTCTGTTCTTGATGGATACAATGTCTGCATATTTGCATATGGTCAA
ACTGGATCAGGAAAAACATTCACAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.218898668
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a