Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G21630_circ_g.1 |
ID in PlantcircBase | ath_circ_003793 |
Alias | Ath_circ_FC0454 |
Organism | Arabidpsis thaliana |
Position | chr1: 7582231-7584769 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE |
Parent gene | AT1G21630 |
Parent gene annotation |
Calcium-binding EF hand family protein |
Parent gene strand | + |
Alternative splicing | AT1G21630_circ_g.2 AT1G21630_circ_g.3 AT1G21630_circ_g.4 |
Support reads | 1 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G21630.2:5 AT1G21630.1:4 AT1G21630.3:4 AT1G21630.4:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.138677579 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7582471-7584766(+) |
Potential amino acid sequence |
MPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQNFQSPGMPAGGTNAPRPANQPM PSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPHITPAVTSSTTTRPQESAPVHN PQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGDVFSVTSTQPKQHPTGSASTTG ISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTGNSGQPYTSSGAASGPPGSTVG VGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKYTKVFVQVDTDRDGKITGNQAR NLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERYREGRPLPPVFPSSIIHSESMF TSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRPVPLSPSDGMVQPTQPKRKMPV LEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQKIDFFRAKMQELVWSYADSKK AGYLGRAEFYNALKLVTVAQSRRELTAEIVKAAIYSPASANIPAPKINLAATPSPQPRGVLPAT QAQGVTSMPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQNFQSPGMPAGGTNAP RPANQPMPSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPHITPAVTSSTTTRPQ ESAPVHNPQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGDVFSVTSTQPKQHPT GSASTTGISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTGNSGQPYTSSGAASG PPGSTVGVGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKYTKVFVQVDTDRDGK ITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERYREGRPLPPVFPSSI IHSESMFTSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRPVPLSPSDGMVQPTQ PKRKMPVLEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQKIDFFRAKMQELVW SYADSKKAGYLGRAEFYNALKLVTVAQSRRELTAEIVKAAIYSPASANIPAPKINLAATPSPQP RGVLPATQAQGVTSMPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQNFQSPGMP AGGTNAPRPANQPMPSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPHITPAVTS STTTRPQESAPVHNPQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGDVFSVTST QPKQHPTGSASTTGISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTGNSGQPYT SSGAASGPPGSTVGVGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKYTKVFVQV DTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERYREGRPLP PVFPSSIIHSESMFTSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRPVPLSPSD GMVQPTQPKRKMPVLEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQKIDFFRA KMQELVWSYADSKKAGYLGRAEFYNALKLVTVAQSRRELTAEIVKAAIYSPASANIPAPKINLA ATPSPQPRGVLPATQAQGVTSMPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQN FQSPGMPAGGTNAPRPANQPMPSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPH ITPAVTSSTTTRPQESAPVHNPQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGD VFSVTSTQPKQHPTGSASTTGISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTG NSGQPYTSSGAASGPPGSTVGVGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKY TKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERY REGRPLPPVFPSSIIHSESMFTSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRP VPLSPSDGMVQPTQPKRKMPVLEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQ KIDFFRAKMQEL(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |