Detail information of AT1G21630_circ_g.1


General Information
CircRNA Name AT1G21630_circ_g.1
ID in PlantcircBase ath_circ_003793
Alias Ath_circ_FC0454
Organism Arabidpsis thaliana
Position chr1: 7582231-7584769  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE
Parent gene AT1G21630
Parent gene annotation Calcium-binding EF hand family protein
Parent gene strand +
Alternative splicing AT1G21630_circ_g.2 AT1G21630_circ_g.3 AT1G21630_circ_g.4
Support reads 1
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G21630.2:5
AT1G21630.1:4
AT1G21630.3:4
AT1G21630.4:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAATTCTTGTGTTTTGGTGTTTAGGTGGATGAACTCGAAAAAGAAATAGCTGATTCCAAGCAG
AAAATTGATTTCTTCCGTGCTAAGATGCAAGAACTTgtatggtcctatgcagattcaaaaaaag
ccggctaccttggccgagcggagttttataatgctctaaagttggtaacagtggcacaaagtag
acgagagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGGTCCTATGCAGATTCAAAAAAAGCCGGCTACCTTGGCCGAGCGGAGTTTTATAATGCTC
TAAAGTTGGTAACAGTGGCACAAAGTAGACGAGAGTTGACTGCTGAGATAGTAAAAGCTGCAAT
TTATAGTCCTGCTTCAGCCAATATCCCTGCACCCAAAATAAATCTTGCTGCAACACCTTCTCCA
CAGCCCAGAGGAGTTTTGCCTGCTACACAAGCTCAGGGAGTTACATCAATGCCATCAGTAGCGG
CTGGTGTGAGAGGGCCTCACATGGGTGGAACTGTAAGCACTAGTAACCAACAAGTAGTCCCAGG
CCAACAGAACCAGTTTACTGGGATACCTCCATCTCAGACACAGCAAAACTTTCAAAGCCCGGGA
ATGCCAGCTGGAGGGACTAATGCACCTCGTCCTGCAAACCAACCTATGCCATCTGATTGGCTCA
GCGGCAGAAGTGTTGGTCCCTCTGGGAACGTGAATTCTCAAATTCCTTCGAGTCAGAGTACATA
TGGTTTGACAGCACCTAATTCAACTGCCAACCATATAACAAAACCACATATAACACCTGCAGTA
ACAAGCTCTACAACAACCAGACCCCAAGAGTCAGCGCCTGTGCACAATCCCCAAGAATCATCTG
CTACTTTCGGTTCTCGTGTATCAAATGTTCCATCCAATCAATTGGTGCCCAAGGATCCCAAGGA
ACTGGCTGCATCAGGAAACGGGTTTACCTCTGACTCACTTTTCGGAGATGTCTTTTCAGTTACT
TCCACGCAGCCAAAACAACATCCTACGGGAAGTGCATCAACAACAGGCATCTCATCGGTTACTA
CTGGAACTGTCGCGGGCCCTGAGATCACACAGTCTGTAGTTAGGCAAAGTTCAATCCCACAACA
GGGTTCATTGAGCCAGCATGCTGTTGGTGTTCAGACCCAGCTTACTGGAAACTCAGGGCAACCA
TATACTTCCTCAGGTGCGGCTTCTGGTCCACCTGGCTCTACTGTTGGAGTTGGAATTTCAGCTA
CCAGTCAGTTGGCCCAGCGTCCGCCCCACCCCCACTCTCAACCACAACCCCGGCCCCAGGGCCA
GTCCCAACCTCCTTGGCCAAAAATGACTCCAGCTGATGTCCAGAAATATACCAAGGTTTTTGTG
CAAGTTGACACTGATAGGGACGGAAAGATCACAGGGAACCAGGCTCGGAATTTGTTCTTAAGTT
GGAGGCTTCCAAGAGGTAGGCTACACTTACTTTTTTGTTACTTTCTCCGTTAACAATGGTTTAG
TTTCAATTTTATCTTCTTAGAATGGTGAACGGGGATTATAATTTAGTGGCACTTCTGAATATTT
GTTTGGATATTGATTAACTGCCGTTTCTGGTTCATCTTGAGTATTTCATGTTTTGGTCCTCCTG
TAGACTATACTATATGTGGATAGAGATTTAATGTTCCTCTAGCACAATTTGTTGAAATTTCCAT
GGGGAATATTGAGGAATGTTTTATGTGTCTCATGCTGGTCCTTGGTGTTACAGACGCTTTGAAG
CAGGTATGGGATTTATCTGATCAAGATAATGACAGCATGCTCTCCTTGCGGGAGTTCTGTATTG
CGGTCTATCTTATGGAGCGTTACAGAGAGGGCCGACCACTTCCCCCAGTGTTCCCAAGCTCTAT
AATACATAGTGAGAGCATGTTCACCTCTCCTGGTCAATCTGTGGCACCACATGGCAATGCATCC
TGGGGACATCCTCAAGGTATTCAATTGCACATACTGTATTACTTACCTTTTTTTCCGTTACACT
AGATAAATTCATATGTACCAAATATTGTAGGGTTCCAACAGCAACCACATCCTGGGGGCTTAAG
GCCACCAGCTGGTCCCAAAGGAAAGCCTCCGAGGCCAGTGCCTCTGTCTCCTAGTGATGGAATG
GTCCAGCCCACTCAGCCAAAGCGTAAAATGCCTGTGTTAGAAAAACCGCTGGTGGATCAACTTA
GCAAAGAGGAGCAGGATTCACTCAACACGAAGTTTGAAGAAGCAACTGCTGTTGATAAAAAGGC
ACTCTCTGGTTTCTCTCTGATTTTCATTTGTTAATGTGGTGAATTGCATTAGTTATCGTGAGTT
TTCTTTTTTCGCATTTTCTATCCGAAGATATCTTTTACCCCTTCCATATGGCATTTATATGAAA
TATTTGTGGATTTGCGTAGCCATAGTCAAGATTAGAAGATATTCTCTCAACTTATGATTGGCAG
TGGCAGTGAATCTTAATTTCATTGGCATGGAAGAAATCACATCGCCATTGAGAACTATGAATAA
TTTCCTTTTCTAATCCTGTTTTGAGTTTCCTTTCTCTATCACATATCATCCGTACCTTTCCCGC
ATAATTGATCAGTTATCCATGCAATATTTGCTGGCGTAACTTAAAAACTTGCGTGGCTGCCTTT
CATTTTTTTAATTCTTGTGTTTTGGTGTTTAGGTGGATGAACTCGAAAAAGAAATAGCTGATTC
CAAGCAGAAAATTGATTTCTTCCGTGCTAAGATGCAAGAACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.138677579
Functional Information
Coding potential Y
Potential coding position 7582471-7584766(+)
Potential amino acid sequence MPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQNFQSPGMPAGGTNAPRPANQPM
PSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPHITPAVTSSTTTRPQESAPVHN
PQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGDVFSVTSTQPKQHPTGSASTTG
ISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTGNSGQPYTSSGAASGPPGSTVG
VGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKYTKVFVQVDTDRDGKITGNQAR
NLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERYREGRPLPPVFPSSIIHSESMF
TSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRPVPLSPSDGMVQPTQPKRKMPV
LEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQKIDFFRAKMQELVWSYADSKK
AGYLGRAEFYNALKLVTVAQSRRELTAEIVKAAIYSPASANIPAPKINLAATPSPQPRGVLPAT
QAQGVTSMPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQNFQSPGMPAGGTNAP
RPANQPMPSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPHITPAVTSSTTTRPQ
ESAPVHNPQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGDVFSVTSTQPKQHPT
GSASTTGISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTGNSGQPYTSSGAASG
PPGSTVGVGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKYTKVFVQVDTDRDGK
ITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERYREGRPLPPVFPSSI
IHSESMFTSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRPVPLSPSDGMVQPTQ
PKRKMPVLEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQKIDFFRAKMQELVW
SYADSKKAGYLGRAEFYNALKLVTVAQSRRELTAEIVKAAIYSPASANIPAPKINLAATPSPQP
RGVLPATQAQGVTSMPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQNFQSPGMP
AGGTNAPRPANQPMPSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPHITPAVTS
STTTRPQESAPVHNPQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGDVFSVTST
QPKQHPTGSASTTGISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTGNSGQPYT
SSGAASGPPGSTVGVGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKYTKVFVQV
DTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERYREGRPLP
PVFPSSIIHSESMFTSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRPVPLSPSD
GMVQPTQPKRKMPVLEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQKIDFFRA
KMQELVWSYADSKKAGYLGRAEFYNALKLVTVAQSRRELTAEIVKAAIYSPASANIPAPKINLA
ATPSPQPRGVLPATQAQGVTSMPSVAAGVRGPHMGGTVSTSNQQVVPGQQNQFTGIPPSQTQQN
FQSPGMPAGGTNAPRPANQPMPSDWLSGRSVGPSGNVNSQIPSSQSTYGLTAPNSTANHITKPH
ITPAVTSSTTTRPQESAPVHNPQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGD
VFSVTSTQPKQHPTGSASTTGISSVTTGTVAGPEITQSVVRQSSIPQQGSLSQHAVGVQTQLTG
NSGQPYTSSGAASGPPGSTVGVGISATSQLAQRPPHPHSQPQPRPQGQSQPPWPKMTPADVQKY
TKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVYLMERY
REGRPLPPVFPSSIIHSESMFTSPGQSVAPHGNASWGHPQGFQQQPHPGGLRPPAGPKGKPPRP
VPLSPSDGMVQPTQPKRKMPVLEKPLVDQLSKEEQDSLNTKFEEATAVDKKVDELEKEIADSKQ
KIDFFRAKMQEL(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a