Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G21630_circ_g.4 |
ID in PlantcircBase | ath_circ_003796 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 7584695-7585449 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G21630 |
Parent gene annotation |
Calcium-binding EF hand family protein |
Parent gene strand | + |
Alternative splicing | AT1G21630_circ_g.1 AT1G21630_circ_g.2 AT1G21630_circ_g.3 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G21630.2:4 AT1G21630.3:4 AT1G21630.4:4 AT1G21630.1:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.162951093 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
7584758-7585446(+) |
Potential amino acid sequence |
MQELVLYKSRCDNRYNEIAERVLGDKRELESLAKKYEEKYKKSGNVGSKLTIEEATFRDIQEKK MELYQAIVKFEEGKLDDSIVKVDELEKEIADSKQKIDFFRAKMQELVLYKSRCDNRYNEIAERV LGDKRELESLAKKYEEKYKKSGNVGSKLTIEEATFRDIQEKKMELYQAIVKFEEGKLDDSIVKV DELEKEIADSKQKIDFFRAKMQELVLYKSRCDNRYNEIAERVLGDKRELESLAKKYEEKYKKSG NVGSKLTIEEATFRDIQEKKMELYQAIVKFEEGKLDDSIVKVDELEKEIADSKQKIDFFRAKMQ ELVLYKSRCDNRYNEIAERVLGDKRELESLAKKYEEKYKKSGNVGSKLTIEEATFRDIQEKKME LYQAIVKFEEGKLDDSIVK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |