Detail information of Os11g0431700_circ_g.1


General Information
CircRNA Name Os11g0431700_circ_g.1
ID in PlantcircBase osa_circ_009241
Alias NA
Organism Oryza sativa
Position chr11: 13893502-13895428  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os11g0431700
Parent gene annotation Similar to Serine carboxypeptidase. (Os11t0431700-01)
Parent gene strand -
Alternative splicing Os11g0431700_circ_g.2 Os11g0431700_circ_g.3
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0431700-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGGACACATAAATGCAATTTGG
GTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAGctttactgtagcgaatgtcaaattgttt
ccatatgctatggtgaatctgcaaataaataaatcgtatttcaggtaatgtactcttcgactga
gtttatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTACTGTAGCGAATGTCAAATTGTTTCCATATGCTATGGTGAATCTGCAAATAAATAAATCG
TATTTCAGGTAATGTACTCTTCGACTGAGTTTATTATGAACTGAAAAACACAGTGTATTTTAAA
CTTATGAAAATCTTATTAATCACCCCGTAGTAGTGTTATACATAACTAAACAAGAAAACGAATT
AGGCAACATTAATCTTACCCAGCAGACTGGCCATCGATATGCCAGGCTCTCCAGTCATCCACAA
TTGGGTAGTTGAGTGATCTCACCCAGGCTTGTGTCCCGAGGAATGGCACAACAGCATCGTGGTC
ACCACTGCACATAAATTTGATGAAACAGTAGTTTACAATACTGGGTATATCTTAAGAAGGTAAA
AATGTGTCTGTAGCTCAACACAGTGAATCAAAGTATTACTTATCATCAAGAGATTTTTGCTAGA
TGCACACATTCGTTGTTAGTTGGGTTAGTAGTTTCCATCCAACATGTTGTTCTGTCATCCAACA
TTACTTTCACCAATGACCACTAGTTTTTCCTATTAAAAGATTTTAAAGTCGAAATGTTAGTAAG
AGTGGACCTGCAAATTTGATGTTTTTTTCCCTGAATAGCTTCATTCAAAAGGATTTTTCACTAA
TTCCTTTTTGAAATGTCATGCTGAAATATATATAAAAAATACAATTTCTTTCAATTGAGGTTAA
TGTTTGTGTGTTTATGTAACACATCCAGAAATTCCTTCAGCTGTCCATTTTTTTATAAATAAAG
AAAATATCTGCCCTTGGTACAGATAGTAGTAATCTGCTTCATAATCCAACGTGTTGATGGGATC
AATTTGTAAAATCAATTCCTGGTAATTGTTTCTAATATTTTATTCAACAAAAGGAGAATTTTGC
ATAAATAAATTGGTTTGTGTGCGTCTGAGTTCTGCACAACCAAAGTCAATATTGAGGTGGGCTC
TAATTTATTTATTCTAACAGAAGGTTTGGTTTATCCTCGATTTATCCCCGTGTATGATTTATTT
ATGTTTTAAGTACAATTCTCACCAAGTGGTTACAAGAACTGATATGAACAACCAAGACTATAAT
ATGAACAGAACACGTTTAAGTATAGGTTTAATTTAGGAACAATCTTTTATTCAAAACATAGTTA
CAATGCTATCTCTAGCTGGTAATGACGAAATAATAAGACTATTTATATTTTCCTCAAAAAATAA
GAATATTTATCAAAAATATGAAATACTCCCTTTTCCTGTGATAGCCATGGCATGTACTTGTCTA
AGGTATATATATATATATTTGTCATAGCCATCTCATCTAGTTTGGATATTCTATTGAAATGTTC
TAAATAATAGCTTGTACAGGTACTACTGAGAACTTGCCAATAACATTTATTACCAATATACCAA
AGCACGGTAACCTTTTAGTGTAACATTTCGATGATACTTTATGCTGCTCCTGATGTCGATGTTG
TATGGTAGATCATGTTCGTGGCACCTAACCCATTCATTTATGGTGCCCTGGATATTTGGCATTT
AGATAATTTGAAAAATGTGCTCGTATGGCAAATGCAAAGGAGTGATTCCTAGAAATGAAAAGGT
GCCCCGAAATTACCTTCTTGATTCCTAGAGTTCTTCGTGTAAAGTTGTTGTTTGCCCAAAAATA
TGACAAATAGTTGGCATAGACCTGTGGATGCGAAAATTCACCTAGATTCAGATGAACTTAAATA
TATATAGAAATATGTACGTGATATTACGTGTAGTGGAGTTCCTTACACCACATTTTATTGAAGG
TTGAGGAGGTGGATGTTTTAGTCCTCCATGCTCCCCCTTCAAGATCTTTCTGTCGATTGTCTCA
TGATTTGGCTTGGGGGACACATAAATGCAATTTGGGTTCAAAATTTGGGCCCTCGAACCTTCGT
GTAGTAG
Conservation Information
Conserved circRNAs osi_circ_008979
PMCS 0.200873339
Functional Information
Coding potential Y
Potential coding position 13895383-13893762(+)
13895166-13893509(+)
Potential amino acid sequence MQFGFKIWALEPSCSSFTVANVKLFPYAMVNPADWPSICQALQSSTIG*(+)
MTNSWHRHHILLKVEEVDVLVLHAPPSRSFCRLSHDLAWGTHKCNLGSKFGPSNLRVVALL*(+
)
Sponge-miRNAs osa-miR2931
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017