Detail information of Os11g0431700_circ_g.3


General Information
CircRNA Name Os11g0431700_circ_g.3
ID in PlantcircBase osa_circ_009243
Alias Os_ciR3299
Organism Oryza sativa
Position chr11: 13895115-13895428  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os11g0431700
Parent gene annotation Similar to Serine carboxypeptidase. (Os11t0431700-01)
Parent gene strand -
Alternative splicing Os11g0431700_circ_g.1 Os11g0431700_circ_g.2
Support reads 3/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0431700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGGACACATAAATGCAATTTGG
GTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAGcttcttgattcctagagttcttcgtgta
aagttgttgtttgcccaaaaatatgacaaatagttggcatagacctgtggatgcgaaaattcac
ctagattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTTGATTCCTAGAGTTCTTCGTGTAAAGTTGTTGTTTGCCCAAAAATATGACAAATAGTTG
GCATAGACCTGTGGATGCGAAAATTCACCTAGATTCAGATGAACTTAAATATATATAGAAATAT
GTACGTGATATTACGTGTAGTGGAGTTCCTTACACCACATTTTATTGAAGGTTGAGGAGGTGGA
TGTTTTAGTCCTCCATGCTCCCCCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGG
GGGACACATAAATGCAATTTGGGTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.127388323
Functional Information
Coding potential Y
Potential coding position 13895383-13895172(+)
13895166-13895119(+)
13895284-13895357(-)
Potential amino acid sequence MQFGFKIWALEPSCSSFLIPRVLRVKLLFAQKYDK*(+)
MTNSWHRHHILLKVEEVDVLVLHAPPSRSFCRLSHDLAWGTHKCNLGSKFGPSNLRVVAS*(+)
MWCLCQLFVIFLGKQQLYTKNSRNQEATTRRFEGPNFEPKLHLCVPQAKS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017