Detail information of Os03g0805200_circ_g.5


General Information
CircRNA Name Os03g0805200_circ_g.5
ID in PlantcircBase osa_circ_022343
Alias Os_ciR8935
Organism Oryza sativa
Position chr3: 33615966-33616111  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0805200
Parent gene annotation Similar to RNA helicase (Fragment). (Os03t0805200-01)
Parent gene strand -
Alternative splicing Os03g0805200_circ_g.4 Os03g0805200_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0805200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCACTTGTTTCCACAGGAATGTCCTCATAGGCATCAAAGTTGATGCCAGTGTTTGCCGTATC
AAAATCAACctccgtatgttctcattcagcgcatcacccaaatcaatctctgcgaaagtattga
ctggcggtggcacatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCGTATGTTCTCATTCAGCGCATCACCCAAATCAATCTCTGCGAAAGTATTGACTGGCGGTG
GCACATCATGGCCACTTGTTTCCACAGGAATGTCCTCATAGGCATCAAAGTTGATGCCAGTGTT
TGCCGTATCAAAATCAAC
Conservation Information
Conserved circRNAs osi_circ_013785 osi_circ_005186*
PMCS 0.446913071
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015